Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 6.4e-94 347.4 179 100.0
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 6.9e-80 300.8 173 85.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.7e-78 296.2 173 86.1
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 8.4e-78 293.9 173 85.5
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 8.4e-78 293.9 172 84.9
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 1.4e-77 293.1 172 84.3
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 3.2e-77 292.0 173 83.2
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.1e-77 290.8 173 84.4
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 9.3e-77 290.4 172 83.1
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 2.1e-76 289.3 173 82.7
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 3.5e-76 288.5 173 82.7
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 4.6e-76 288.1 170 82.4
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 6.0e-76 287.7 173 82.7
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 6.0e-76 287.7 173 80.9
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 6.0e-76 287.7 173 82.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 6.0e-76 287.7 171 84.2
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 6.0e-76 287.7 176 83.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 6.0e-76 287.7 172 81.4
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 6.0e-76 287.7 173 82.1
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 7.8e-76 287.3 173 82.1
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.0e-75 287.0 173 80.9
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.0e-75 287.0 173 81.5
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.7e-75 286.2 173 80.3
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-75 286.2 173 81.5
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.7e-75 286.2 173 82.1
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 3.9e-75 285.0 173 82.1
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 5.1e-75 284.6 171 84.2
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 5.1e-75 284.6 173 80.9
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 6.6e-75 284.3 173 80.9
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 8.7e-75 283.9 177 78.0
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.1e-74 283.5 173 80.3
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.5e-74 282.3 174 80.5
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-74 282.3 173 80.3
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.5e-74 282.3 173 80.3
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 2.5e-74 282.3 173 80.3
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 4.3e-74 281.6 173 79.8
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 4.3e-74 281.6 173 79.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 7.3e-74 280.8 173 80.3
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 7.3e-74 280.8 173 80.3
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.3e-74 280.8 173 80.3
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 3.6e-73 278.5 173 80.9
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 4.8e-73 278.1 173 79.2
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 6.2e-73 277.7 173 79.8
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 6.2e-73 277.7 173 79.2
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.1e-72 276.9 172 78.5
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 6.9e-72 274.2 172 77.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 9.0e-72 273.9 171 80.1
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.0e-72 273.9 170 78.8
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 9.0e-72 273.9 173 75.7
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.5e-71 273.1 172 77.3
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.5e-71 273.1 173 75.7
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.6e-71 272.3 170 78.2
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.6e-71 272.3 170 78.2
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.4e-71 271.9 170 78.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 1.3e-70 270.0 173 78.6
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.7e-70 269.6 167 79.6
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.9e-70 268.1 167 78.4
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.4e-69 266.5 165 80.6
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.4e-69 266.5 173 77.5
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 5.4e-69 264.6 192 70.8
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 3.5e-68 261.9 176 77.3
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.3e-67 260.0 173 75.7
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.8e-67 259.6 173 73.4
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.3e-67 259.2 172 77.9
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 6.7e-67 257.7 173 74.6
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 9.6e-66 253.8 173 71.7
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 3.7e-65 251.9 171 71.9
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 4.8e-65 251.5 173 72.3
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 9.0e-64 247.3 146 82.9
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.2e-63 246.9 173 71.7
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.2e-63 246.9 152 80.9
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.5e-63 246.5 173 71.7
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 5.8e-63 244.6 173 71.1
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 5.8e-63 244.6 152 79.6
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 7.6e-63 244.2 174 70.1
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.3e-62 243.4 173 70.5
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.7e-62 243.0 173 70.5
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.7e-62 243.0 173 70.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.2e-62 242.7 178 69.7
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 2.5e-61 239.2 171 70.2
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 3.2e-61 238.8 245 56.3
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 5.5e-61 238.0 152 78.9
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 7.1e-61 237.7 152 78.9
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.6e-60 236.5 152 78.3
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.7e-60 235.7 268 52.6
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 4.6e-60 235.0 146 79.5
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 6.0e-60 234.6 164 72.0
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 6.0e-60 234.6 152 77.0
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.3e-59 233.4 146 80.8
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.3e-58 228.8 142 76.8
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.3e-54 216.9 178 65.7
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.9e-53 213.0 262 50.0
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 7.9e-52 207.6 118 88.1
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.5e-50 202.6 176 62.5
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.8e-48 196.4 144 71.5
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 6.9e-48 194.5 117 82.1
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-47 193.4 173 57.2
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-47 193.4 173 57.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 3.6e-44 182.2 218 48.6
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 4.5e-39 165.2 143 62.9
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 8.5e-38 161.0 102 77.5
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.4e-37 160.2 169 52.1
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.1e-34 150.6 176 46.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.1e-32 144.1 117 62.4
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.4e-32 143.7 83 88.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.0e-31 139.8 86 76.7
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.4e-27 127.1 99 66.7
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 4.4e-26 122.1 73 82.2
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 6.5e-22 108.2 156 43.6
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-21 107.1 141 46.1
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.9e-21 106.7 162 42.6
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 5.5e-21 105.1 140 47.1
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-20 104.0 156 42.9
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-20 102.8 156 42.3
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.0e-19 100.9 168 36.3
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-19 99.8 155 40.0
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 3.0e-19 99.4 59 76.3
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-19 98.2 158 41.1
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-19 98.2 158 41.1
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 8.8e-19 97.8 137 45.3
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-17 94.0 128 47.7
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.8e-14 82.4 175 34.9
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 9.4e-13 77.8 104 47.1
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 2.7e-12 76.3 139 41.7
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-12 75.5 139 41.0
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 6.1e-12 75.1 155 38.1
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 8.8e-11 71.2 156 35.9
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 4.4e-10 68.9 136 38.2
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-10 68.6 137 37.2
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-09 66.2 176 32.4
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.1e-08 64.3 40 77.5
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.6e-07 60.5 56 58.9
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.7e-06 57.0 56 57.1


User provided reference genes

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