Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 0.0e+00 1125.9 718 100.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 7.1e-144 515.4 766 53.5
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-139 501.5 756 50.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.7e-137 494.2 752 54.4
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 8.4e-137 491.9 758 53.0
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.9e-136 490.7 755 51.0
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.5e-136 489.2 758 52.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.5e-136 489.2 759 53.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.9e-134 483.0 766 53.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 8.7e-134 481.9 717 52.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.4e-130 469.9 759 53.1
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.3e-121 441.4 730 50.4
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.4e-120 438.0 754 53.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 9.3e-120 435.3 727 51.0
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.8e-116 423.7 750 50.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 3.1e-115 420.2 757 54.3
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.5e-112 410.6 745 50.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.4e-110 404.8 767 51.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.7e-108 396.7 815 43.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.8e-107 394.4 710 48.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.1e-107 393.7 719 44.2
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.1e-107 393.3 787 42.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 6.5e-105 386.0 732 51.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 7.2e-104 382.5 795 43.5
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 9.4e-104 382.1 662 46.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.3e-101 373.6 778 44.7
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.8e-100 369.8 760 42.4
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.8e-99 367.9 756 41.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.4e-99 367.5 687 42.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.2e-98 365.2 718 46.0
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.0e-98 364.4 787 48.0
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.6e-98 364.0 738 50.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.9e-97 360.5 738 45.9
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.8e-97 360.1 752 50.1
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.1e-96 358.6 742 48.2
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.1e-96 358.6 782 44.2
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.2e-96 357.1 762 40.6
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-95 353.6 774 47.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.6e-95 353.6 755 50.6
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.8e-94 351.3 800 45.4
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.7e-93 346.3 785 42.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.7e-92 343.6 780 42.1
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.7e-92 343.6 780 42.1
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.1e-91 342.0 780 46.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-91 341.7 783 41.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.8e-91 341.3 736 40.2
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 9.1e-91 339.0 728 43.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 5.9e-90 336.3 726 44.6
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 5.5e-88 329.7 737 49.3
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.6e-87 328.2 797 43.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.0e-87 325.9 749 43.3
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 5.2e-86 323.2 803 43.8
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 6.8e-86 322.8 809 40.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 6.8e-86 322.8 818 39.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 8.8e-86 322.4 807 42.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-85 321.6 779 38.9
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.6e-85 320.9 811 43.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 4.4e-85 320.1 726 38.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.7e-84 318.2 794 42.6
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.2e-84 317.8 794 42.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 6.3e-84 316.2 804 43.8
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 8.3e-84 315.8 792 43.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.4e-83 315.1 770 38.2
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.8e-83 314.7 792 38.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.4e-83 314.3 815 39.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.1e-83 313.9 735 43.5
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.5e-82 310.5 793 43.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.5e-82 310.1 695 43.2
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.8e-79 300.8 809 41.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.6e-79 300.4 707 46.8
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 8.0e-79 299.3 783 41.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 9.8e-77 292.4 810 47.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.8e-76 290.8 767 37.4
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-75 288.9 693 44.0
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.8e-75 288.1 679 44.5
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.4e-75 287.7 470 46.6
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.4e-75 286.6 725 37.4
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 7.8e-74 282.7 754 42.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.0e-73 282.3 265 61.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.3e-73 282.0 755 34.8
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.1e-72 278.9 699 43.1
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.3e-72 276.9 755 35.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-71 275.0 756 36.2
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.1e-71 273.1 737 44.0
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.0e-70 272.3 658 41.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.7e-68 265.0 724 37.7
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 2.4e-67 261.2 444 43.5
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 2.4e-67 261.2 739 36.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.6e-66 258.5 727 34.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.6e-66 256.9 805 34.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.3e-65 255.4 747 36.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 6.6e-65 253.1 734 38.0
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.6e-63 247.3 770 41.0
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.8e-62 245.0 713 40.8
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.5e-61 241.9 800 43.4
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.6e-61 241.1 721 35.4
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 7.5e-61 239.6 754 34.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.7e-60 238.4 311 55.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-59 235.3 780 43.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.3e-57 228.8 806 34.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.5e-56 222.6 768 38.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.6e-55 221.9 317 54.6
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 2.1e-55 221.5 671 37.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.1e-54 219.2 727 36.9
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.4e-54 218.8 776 35.1
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.8e-54 218.4 334 47.6
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.2e-53 215.7 638 35.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.3e-52 212.2 707 32.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 8.3e-52 209.5 748 40.4
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.1e-51 207.2 756 40.5
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.7e-50 204.5 758 40.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.0e-50 203.4 469 50.7
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 5.1e-49 200.3 798 37.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 9.5e-48 196.1 708 42.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.8e-47 194.5 745 32.2
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.5e-45 188.7 637 35.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.6e-45 188.0 722 41.6
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.4e-45 187.6 701 41.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-44 185.7 698 40.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 4.9e-44 183.7 643 44.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.4e-44 183.0 734 38.8
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.9e-43 181.8 511 40.3
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.4e-43 180.3 630 36.5
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.2e-43 179.5 742 33.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-41 175.6 218 49.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.9e-41 174.1 628 35.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 7.3e-40 169.9 652 31.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.8e-39 167.9 637 37.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 3.6e-39 167.5 642 32.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.1e-38 166.0 751 30.1
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.8e-38 165.2 604 36.8
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.9e-38 163.3 445 36.2
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.9e-38 163.3 649 35.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.3e-36 159.1 264 41.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.9e-36 157.1 581 31.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 8.4e-36 156.4 718 30.5
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.4e-35 154.8 406 36.7
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-34 152.5 660 30.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 6.0e-34 150.2 313 40.9
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 8.1e-31 139.8 682 30.2
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.4e-30 139.0 624 29.5
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.3e-28 132.5 175 52.6
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.9e-25 120.9 424 42.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 6.7e-25 120.2 143 50.3
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 8.7e-25 119.8 589 35.8
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.9e-24 118.6 686 27.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.3e-23 115.9 794 27.7
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.1e-22 111.3 193 45.6
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.4e-21 107.8 159 46.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-20 105.1 142 50.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.2e-20 105.1 142 50.0
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 2.4e-19 101.7 145 49.7
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.6e-18 99.0 133 51.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.1e-18 98.6 609 29.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.5e-18 97.8 224 39.3
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.3e-17 95.1 529 38.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-16 92.0 338 35.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 6.2e-15 87.0 135 47.4
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 8.2e-15 86.7 638 32.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-12 79.3 274 32.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.9e-12 78.2 214 36.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 4.9e-12 77.4 92 47.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.9e-12 77.4 444 39.2
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.9e-11 75.5 115 43.5
Peaxi162Scf00559g00031 Petunia axillaris HOM05D003795 ORTHO05D004308 2.7e-10 71.6 314 26.1
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.8e-09 68.9 60 61.7
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.3e-09 68.6 136 39.0
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.0e-09 68.2 116 44.8
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 5.1e-09 67.4 67 65.7
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 7.4e-08 63.5 80 48.8
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.3e-07 62.8 137 40.1
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-06 59.3 72 54.2


User provided reference genes

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