Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 3.6e-152 541.6 281 100.0
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 8.4e-133 477.2 275 86.5
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 2.1e-131 472.6 279 81.4
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.1e-131 472.6 276 84.8
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.3e-130 469.9 276 84.1
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.3e-130 469.2 275 84.0
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.3e-129 465.3 279 83.5
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.3e-129 465.3 271 85.6
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.6e-128 463.0 279 82.4
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 8.1e-128 460.7 279 81.4
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-127 460.3 279 81.7
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.1e-127 460.3 279 81.7
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.1e-127 460.3 279 82.4
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.1e-127 460.3 279 81.4
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.4e-127 459.9 279 82.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.5e-126 456.4 279 80.3
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 1.5e-126 456.4 279 79.6
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 5.8e-126 454.5 279 81.0
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 7.6e-126 454.1 275 81.8
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.1e-124 450.3 279 79.9
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 1.4e-124 449.9 277 80.5
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.9e-124 449.5 279 78.9
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 3.2e-124 448.7 279 80.3
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 4.2e-124 448.4 276 81.2
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 7.1e-124 447.6 279 80.6
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.3e-124 447.2 275 80.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 9.3e-124 447.2 277 79.4
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.2e-123 446.8 275 80.4
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 2.7e-123 445.7 279 79.6
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 3.5e-123 445.3 279 78.9
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 7.9e-123 444.1 275 80.0
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.8e-122 443.0 279 78.1
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.8e-122 443.0 277 78.7
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.3e-122 442.6 279 78.9
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.0e-122 442.2 279 77.8
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 6.7e-122 441.0 277 79.8
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.1e-121 440.3 281 78.6
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.5e-121 439.9 279 78.1
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.5e-121 439.9 279 77.8
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 1.9e-121 439.5 275 77.8
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.5e-121 439.1 279 77.4
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 5.6e-121 438.0 275 78.2
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 7.4e-121 437.6 277 78.7
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 7.4e-121 437.6 279 78.1
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.3e-120 436.8 277 78.3
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 1.3e-120 436.8 280 78.2
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 2.1e-120 436.0 274 78.1
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 2.1e-120 436.0 274 78.5
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.1e-120 436.0 276 76.4
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.7e-120 435.3 276 76.4
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.7e-120 435.3 334 69.2
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 4.8e-120 434.9 274 77.4
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 8.2e-120 434.1 277 77.3
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.4e-119 433.3 279 76.3
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.4e-119 433.3 274 77.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.8e-119 433.0 277 79.4
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 2.4e-119 432.6 283 77.4
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 5.3e-119 431.4 275 78.2
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 6.9e-119 431.0 274 77.4
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.5e-118 429.9 274 77.0
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 2.0e-118 429.5 279 75.6
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 2.6e-118 429.1 277 76.5
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 2.6e-118 429.1 274 76.6
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.6e-118 429.1 274 76.6
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.7e-117 426.4 274 75.9
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.9e-117 425.6 276 76.4
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 4.9e-117 424.9 246 86.2
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 6.5e-117 424.5 276 76.8
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 8.4e-117 424.1 275 76.7
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 4.2e-116 421.8 279 74.9
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 7.1e-116 421.0 279 73.8
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 3.5e-115 418.7 279 74.6
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 4.6e-115 418.3 278 74.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.0e-114 417.2 279 74.9
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 4.3e-113 411.8 279 75.3
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 5.7e-113 411.4 279 73.5
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.3e-112 410.2 279 73.5
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 8.2e-112 407.5 246 82.5
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.1e-111 407.1 279 73.8
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.4e-111 406.8 261 75.9
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.8e-111 406.4 276 73.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.9e-110 401.4 355 59.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 3.2e-108 395.6 285 71.6
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.3e-104 383.6 426 51.4
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.2e-104 382.9 243 77.0
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 2.6e-102 375.9 246 78.5
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 5.0e-101 371.7 298 65.4
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 7.9e-99 364.4 295 63.1
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 7.9e-99 364.4 234 77.4
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.5e-97 360.1 289 63.3
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 4.8e-96 355.1 279 67.7
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 4.5e-94 348.6 279 66.3
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 4.7e-91 338.6 276 66.3
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.1e-91 338.2 375 50.7
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.1e-89 334.0 322 56.5
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 4.8e-88 328.6 225 75.6
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.1e-84 317.4 290 57.6
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.0e-78 296.6 293 50.2
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 5.9e-78 295.0 202 73.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 7.7e-78 294.7 295 57.3
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 8.0e-75 284.6 168 83.9
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 8.8e-74 281.2 173 79.8
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 2.0e-73 280.0 307 53.1
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.8e-72 275.4 170 81.8
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 3.1e-71 272.7 168 81.5
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 7.0e-71 271.6 168 81.0
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 2.0e-70 270.0 161 78.9
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 6.8e-66 255.0 158 75.3
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.4e-65 252.7 182 69.8
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.0e-61 241.1 149 77.2
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.2e-46 191.0 118 83.9
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 4.0e-42 176.0 131 71.8
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.7e-29 134.0 80 83.8
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.2e-27 127.9 136 52.9
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 5.2e-26 122.5 108 57.4
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.1e-20 104.8 94 61.7
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 2.5e-20 103.6 92 60.9
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 2.1e-19 100.5 94 59.6
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 1.8e-18 97.4 255 30.2
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 7.6e-17 92.0 73 67.1
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 1.4e-15 87.8 156 48.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 9.3e-15 85.1 85 56.5
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 4.8e-11 72.8 41 85.4
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 6.4e-08 62.4 77 49.4
Manes.05G153500 Manihot esculenta HOM05D000028 ORTHO05D000701 2.4e-07 60.5 291 24.7
Psat0s5121g0040 Pisum sativum HOM05D000028 ORTHO05D000701 2.4e-07 60.5 303 25.4
Manes.18G018800 Manihot esculenta HOM05D000028 ORTHO05D000701 5.5e-07 59.3 290 25.5
Eucgr.I00346 Eucalyptus grandis HOM05D000028 ORTHO05D000701 1.2e-06 58.2 293 24.9
Cfa013894 Carpinus fangiana HOM05D000028 ORTHO05D000701 1.6e-06 57.8 293 24.6
CiPaw.08G061700 Carya illinoinensis HOM05D000028 ORTHO05D000701 1.6e-06 57.8 289 23.9
Duzib041G0360 Durio zibethinus HOM05D000028 ORTHO05D000701 2.1e-06 57.4 290 24.8
CsaV3_3G045560 Cucumis sativus L. HOM05D000028 ORTHO05D000701 6.0e-06 55.8 293 23.9
Duzib116G0228 Durio zibethinus HOM05D000028 ORTHO05D000701 6.0e-06 55.8 289 24.2
Eucgr.F01847 Eucalyptus grandis HOM05D000028 ORTHO05D000701 6.0e-06 55.8 293 24.9
Glyma.14G216200 Glycine max HOM05D000028 ORTHO05D000701 6.0e-06 55.8 297 24.9
CSS0014004 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000701 7.9e-06 55.5 290 24.5


User provided reference genes

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