Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.4e-237 825.9 415 100.0
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 2.9e-158 562.4 407 71.5
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.6e-151 540.0 419 67.3
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.9e-149 533.1 405 69.4
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.5e-149 532.7 406 69.2
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.6e-148 530.0 415 66.5
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 4.7e-148 528.5 412 66.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 1.4e-147 526.9 415 65.3
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.3e-147 526.2 415 65.5
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 3.0e-147 525.8 406 68.5
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 5.2e-147 525.0 413 66.3
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 5.2e-147 525.0 415 65.3
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.0e-146 523.1 415 65.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 8.3e-145 517.7 406 66.0
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.8e-144 516.5 404 65.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.8e-144 516.5 412 66.7
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 4.1e-144 515.4 401 65.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.0e-143 513.1 406 66.7
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.0e-143 513.1 405 65.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 2.3e-142 509.6 404 65.1
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 3.3e-141 505.8 395 66.3
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.8e-139 500.0 401 63.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 1.8e-139 500.0 410 64.1
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 4.0e-139 498.8 406 63.8
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 6.4e-137 491.5 404 62.4
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 8.3e-137 491.1 405 63.0
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 5.4e-136 488.4 405 62.5
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.0e-136 488.0 395 63.3
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 9.2e-136 487.6 403 63.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 3.0e-134 482.6 398 62.8
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.9e-133 479.9 406 62.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.9e-133 479.9 406 61.6
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-133 479.6 406 62.1
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.6e-132 476.9 406 61.6
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.1e-132 476.5 409 61.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 2.8e-132 476.1 402 60.4
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 3.6e-132 475.7 398 62.3
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 3.6e-132 475.7 396 60.9
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 4.7e-132 475.3 444 58.3
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 6.2e-132 474.9 398 61.6
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.4e-131 473.8 407 63.6
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-131 473.0 402 61.4
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.3e-131 473.0 402 61.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 3.1e-131 472.6 398 60.6
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 4.0e-131 472.2 400 60.2
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 5.2e-131 471.9 411 59.1
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 5.2e-131 471.9 406 60.6
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 5.2e-131 471.9 398 62.8
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 8.9e-131 471.1 400 62.5
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.4e-130 469.2 401 61.8
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 9.8e-130 467.6 400 62.8
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.7e-129 466.8 409 59.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 2.2e-129 466.5 412 60.9
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 2.9e-129 466.1 413 59.6
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.7e-129 465.7 400 59.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.7e-129 465.7 463 55.9
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 3.2e-128 462.6 391 65.5
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 4.1e-128 462.2 397 61.7
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 9.2e-128 461.1 400 60.2
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 1.6e-127 460.3 404 58.7
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.6e-127 460.3 404 59.9
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.7e-127 459.5 401 59.6
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.5e-127 459.1 405 59.0
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 4.6e-127 458.8 404 60.9
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 6.0e-127 458.4 420 58.6
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 3.0e-126 456.1 393 61.1
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 5.0e-126 455.3 428 57.2
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 2.8e-124 449.5 405 59.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.8e-123 446.8 404 57.7
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.3e-123 446.4 431 56.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.0e-122 443.4 408 59.6
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.4e-120 436.4 414 54.8
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.2e-119 434.1 401 55.9
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 2.3e-118 429.9 395 57.0
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 8.6e-118 427.9 397 56.4
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.5e-117 426.4 408 56.6
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 7.3e-117 424.9 416 55.0
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.4e-115 420.6 416 53.8
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 2.3e-115 419.9 394 55.1
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.3e-115 419.9 416 54.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.1e-115 419.5 416 54.6
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.4e-114 416.0 373 60.1
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 4.4e-114 415.6 407 54.5
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 4.4e-114 415.6 395 54.4
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 7.6e-114 414.8 398 56.3
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 7.6e-114 414.8 401 55.9
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 9.9e-114 414.5 430 53.5
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.8e-113 412.5 419 53.7
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 3.8e-113 412.5 403 53.8
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.1e-112 408.3 406 54.2
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.5e-109 400.6 403 55.8
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 4.3e-109 399.1 424 52.4
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 4.7e-108 395.6 418 52.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.0e-106 390.2 404 53.5
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 2.2e-105 386.7 414 52.2
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 6.4e-105 385.2 412 52.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.1e-104 384.4 408 52.7
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.9e-104 383.6 408 52.5
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.2e-104 382.9 271 68.3
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 9.3e-104 381.3 411 50.1
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.7e-103 379.8 472 50.0
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 4.6e-103 379.0 426 50.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.9e-102 375.9 317 61.8
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 5.3e-99 365.5 293 62.5
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 7.6e-98 361.7 454 46.7
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 7.6e-98 361.7 406 50.7
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.5e-95 352.8 404 52.7
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 8.4e-89 331.6 267 60.7
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.4e-88 330.1 407 47.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.2e-88 329.7 243 68.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 3.2e-88 329.7 303 58.4
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.8e-84 316.6 375 48.3
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.4e-82 309.7 417 45.1
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.2e-81 307.0 445 42.5
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 3.8e-81 306.2 400 43.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 5.3e-75 285.8 378 45.0
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.5e-74 282.7 407 43.0
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.6e-71 273.1 451 38.8
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 8.7e-70 268.5 459 38.3
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 2.5e-64 250.4 426 40.4
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.3e-60 238.0 183 67.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.7e-60 236.5 219 56.6
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-59 235.0 166 62.7
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.9e-59 232.3 270 45.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.4e-56 224.6 312 46.2
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 8.5e-49 198.7 195 57.4
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-46 189.1 155 59.4
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-44 184.5 182 53.8
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 8.5e-41 172.2 110 70.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 8.0e-39 165.6 176 48.3
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.9e-32 144.4 175 49.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 8.8e-30 135.6 181 49.2
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.3e-28 131.7 276 33.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.6e-26 124.8 91 67.0
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 3.6e-23 113.6 146 43.2
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 7.5e-21 105.9 113 49.6
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.8e-15 87.4 65 60.0
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 4.7e-15 86.7 87 50.6
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.4e-14 85.1 111 44.1
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 2.6e-13 80.9 56 71.4
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.6e-13 80.9 56 71.4
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.2e-12 77.8 54 66.7
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 4.1e-11 73.6 90 50.0
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 4.1e-11 73.6 90 50.0
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.3e-09 68.6 256 25.8
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.9e-08 64.7 159 35.8


User provided reference genes

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