Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 2.2e-192 675.6 381 100.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.7e-102 376.3 381 59.6
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.9e-96 356.3 384 59.6
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.9e-96 356.3 382 57.6
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 9.4e-95 351.3 382 59.2
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.2e-93 345.5 382 54.5
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.2e-93 345.5 382 54.5
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 8.8e-93 344.7 382 57.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 7.5e-92 341.7 385 59.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-91 340.9 385 59.5
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.1e-90 337.8 383 60.1
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.9e-88 329.7 385 58.7
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.2e-86 324.3 382 55.5
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.1e-86 323.6 382 57.1
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.8e-85 320.5 381 51.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.5e-84 317.4 382 53.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.4e-82 310.8 382 53.7
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.4e-82 310.1 390 53.1
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.1e-82 309.7 378 57.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.2e-81 307.8 383 55.9
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.6e-81 307.4 381 51.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.7e-81 306.6 369 53.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 5.9e-81 305.4 411 49.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 3.3e-79 299.7 402 52.2
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.4e-77 294.3 398 48.0
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.2e-76 291.2 396 49.7
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-76 291.2 396 49.7
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.0e-76 290.4 396 49.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.4e-76 289.3 396 49.5
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.7e-76 288.9 382 52.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.3e-75 287.7 384 50.0
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.2e-75 287.0 397 49.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-73 281.2 395 48.4
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.2e-73 281.2 395 48.4
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.9e-73 278.9 389 48.8
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.0e-72 278.1 389 47.8
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.3e-72 277.7 395 53.7
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.3e-72 277.7 408 47.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 8.6e-72 275.0 383 48.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.9e-71 273.9 392 47.7
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-71 273.9 389 44.7
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.3e-71 273.1 404 43.6
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.3e-71 271.9 407 51.4
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.6e-70 270.8 409 50.9
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.1e-70 270.4 398 46.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.6e-70 269.6 387 51.2
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.6e-70 269.6 387 51.2
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.3e-69 266.9 396 49.0
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.0e-69 266.2 411 49.1
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.0e-69 266.2 417 43.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.8e-69 265.4 413 47.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.5e-68 264.2 404 45.0
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.5e-68 264.2 406 45.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.6e-68 263.5 396 43.7
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 4.4e-68 262.7 396 49.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.7e-67 260.8 398 46.0
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 2.9e-67 260.0 379 45.1
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 2.9e-67 260.0 379 45.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.9e-67 260.0 395 44.6
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 3.7e-67 259.6 407 46.2
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 4.9e-67 259.2 406 47.5
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 4.9e-67 259.2 396 47.2
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 6.4e-67 258.8 395 47.8
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.9e-66 257.3 396 49.7
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.6e-65 254.2 409 48.4
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.7e-65 253.4 414 44.9
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 4.6e-65 252.7 395 46.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 4.6e-65 252.7 397 44.8
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.1e-63 248.1 402 44.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.5e-63 247.7 396 46.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 4.3e-63 246.1 396 42.9
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.1e-62 243.8 409 47.4
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.6e-62 243.0 382 49.2
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.7e-62 242.7 344 50.9
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 8.0e-62 241.9 397 47.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.1e-61 241.5 371 46.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 4.0e-61 239.6 370 48.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.2e-60 238.0 387 44.7
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.4e-60 236.5 375 43.5
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 9.8e-60 235.0 369 45.8
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.4e-58 231.1 396 42.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.6e-57 227.6 389 45.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.5e-57 226.5 404 45.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.3e-56 223.8 394 44.9
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.0e-56 223.4 388 47.9
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.5e-55 221.1 319 45.1
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.3e-55 219.9 319 45.1
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 7.3e-55 218.8 392 40.8
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 8.1e-54 215.3 383 46.2
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.4e-53 214.5 322 50.0
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.2e-53 212.6 383 38.6
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.2e-52 211.5 400 42.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 2.0e-52 210.7 397 46.1
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 5.8e-52 209.1 384 45.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.6e-52 208.8 340 46.5
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 9.9e-52 208.4 403 41.9
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 9.9e-52 208.4 330 46.1
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 3.7e-51 206.5 390 45.9
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.9e-50 204.1 340 46.2
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.4e-50 203.8 390 45.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.2e-50 203.4 278 45.3
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 9.2e-50 201.8 340 45.9
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.5e-49 199.9 382 43.7
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.6e-47 192.6 410 36.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 9.6e-47 191.8 392 42.1
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.6e-47 191.8 380 42.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 4.7e-46 189.5 382 35.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.1e-46 188.7 327 46.8
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.1e-45 188.3 383 40.5
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 9.9e-44 181.8 393 37.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.4e-42 177.9 349 42.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.9e-42 177.6 393 38.9
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.2e-42 176.4 359 40.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 9.3e-42 175.3 350 40.0
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 3.0e-40 170.2 223 57.4
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.9e-39 167.5 251 53.4
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 9.6e-39 165.2 318 45.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 8.1e-38 162.2 401 33.7
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.5e-36 157.9 394 34.0
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.4e-36 156.4 396 34.1
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.3e-35 154.8 322 35.7
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 7.1e-34 149.1 398 33.2
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.7e-33 147.1 150 69.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.1e-32 142.9 395 34.9
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.9e-31 141.0 217 55.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.3e-31 140.2 162 66.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 9.6e-31 138.7 380 35.0
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.8e-30 137.1 400 32.5
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.8e-30 137.1 178 50.6
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 6.9e-29 132.5 397 33.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 6.0e-25 119.4 387 30.0
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.3e-24 118.2 374 33.4
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.3e-24 118.2 334 31.4
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-23 115.2 321 32.1
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.5e-23 114.0 406 31.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 9.0e-21 105.5 313 35.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 1.5e-20 104.8 312 31.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.4e-20 103.6 311 34.7
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-20 103.2 312 31.4
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 5.8e-20 102.8 340 30.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-19 101.7 320 31.2
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.8e-19 100.1 318 30.5
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.5e-18 96.3 329 31.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.1e-16 89.7 320 30.0
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.1e-16 89.7 320 30.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.7e-14 83.6 309 28.8
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 2.4e-13 80.9 367 27.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.5e-12 76.6 393 27.0
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-10 72.0 312 30.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 9.3e-10 68.9 313 29.4
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-09 66.6 312 26.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-08 65.1 311 27.3
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.1e-08 63.2 111 36.9
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 2.5e-07 60.8 399 29.6
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 4.8e-06 56.6 169 39.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 8.2e-06 55.8 207 31.4


User provided reference genes

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