Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 8.8e-105 383.6 195 100.0
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 3.8e-84 315.1 188 82.4
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.1e-83 313.5 192 80.7
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 1.9e-83 312.8 190 80.0
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 2.5e-83 312.4 190 81.6
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 2.5e-83 312.4 190 82.1
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 4.2e-83 311.6 190 83.2
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 1.6e-82 309.7 191 80.1
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.7e-82 308.9 190 81.1
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 2.7e-82 308.9 190 81.6
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 8.0e-82 307.4 190 81.1
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.4e-81 306.6 188 80.3
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 6.8e-81 304.3 191 77.5
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 8.8e-81 303.9 190 78.9
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 8.8e-81 303.9 190 80.5
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 9.8e-80 300.4 190 76.3
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 1.3e-79 300.1 189 77.8
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 6.3e-79 297.7 190 75.3
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 6.3e-79 297.7 191 76.4
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.8e-78 296.2 195 76.4
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 4.1e-78 295.0 188 76.6
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 5.4e-78 294.7 189 76.2
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 5.4e-78 294.7 190 76.3
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 7.0e-78 294.3 190 74.2
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 9.1e-78 293.9 188 74.5
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.2e-77 293.5 185 78.9
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 2.0e-77 292.7 212 70.8
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 2.7e-77 292.4 190 76.8
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 2.7e-77 292.4 188 78.2
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 3.5e-77 292.0 186 75.3
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.3e-76 290.0 191 75.4
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 3.8e-76 288.5 190 77.9
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 5.0e-76 288.1 177 81.4
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 5.0e-76 288.1 184 75.0
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 1.1e-75 287.0 187 74.3
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.1e-75 287.0 188 75.0
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 1.9e-75 286.2 190 70.5
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 5.5e-75 284.6 188 73.9
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 5.5e-75 284.6 190 75.3
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 9.5e-75 283.9 186 73.7
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 9.5e-75 283.9 188 77.1
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 9.5e-75 283.9 232 64.2
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 9.5e-75 283.9 186 73.1
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 9.5e-75 283.9 191 70.7
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.1e-74 282.7 190 72.1
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 2.1e-74 282.7 190 74.7
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 2.8e-74 282.3 188 72.3
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 3.6e-74 282.0 190 70.5
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 1.0e-73 280.4 190 74.2
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.8e-73 279.6 189 71.4
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 1.5e-72 276.6 190 70.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 4.4e-72 275.0 186 74.7
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 1.3e-71 273.5 190 70.5
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 1.7e-71 273.1 190 69.5
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 2.2e-71 272.7 190 74.7
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 2.8e-71 272.3 188 72.3
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 2.4e-70 269.2 189 67.7
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 2.4e-70 269.2 184 68.5
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 3.1e-70 268.9 190 66.3
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 5.4e-70 268.1 190 73.7
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 7.0e-70 267.7 184 68.5
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.2e-69 266.9 175 70.9
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 1.2e-69 266.9 177 76.8
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 1.7e-68 263.1 186 70.4
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 6.6e-68 261.2 190 66.8
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 2.5e-67 259.2 191 64.9
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 9.5e-67 257.3 169 72.2
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.2e-66 256.9 227 59.5
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 1.8e-65 253.1 164 76.2
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 1.8e-65 253.1 164 76.2
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 4.4e-64 248.4 152 77.0
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 5.7e-64 248.1 169 75.1
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 1.7e-63 246.5 169 69.8
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 8.3e-63 244.2 153 76.5
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 4.6e-61 238.4 153 77.1
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 1.3e-60 236.9 156 75.6
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 1.9e-59 233.0 205 59.0
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 3.2e-54 215.7 138 74.6
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 5.4e-54 214.9 138 74.6
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.1e-49 200.7 120 83.3
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 7.5e-48 194.5 210 54.3
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 2.9e-47 192.6 123 74.8
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.1e-46 188.7 152 65.8
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.7e-45 186.0 124 70.2
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 8.6e-44 181.0 109 78.9
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 8.6e-44 181.0 215 49.8
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 3.6e-42 175.6 102 84.3
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 3.9e-36 155.6 133 63.9
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 4.0e-33 145.6 92 79.3
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 6.9e-33 144.8 133 57.9
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 2.2e-31 139.8 192 44.8
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 5.1e-28 128.6 78 78.2
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 2.1e-26 123.2 138 52.9
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 3.1e-25 119.4 74 79.7
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 5.3e-25 118.6 70 80.0
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 6.9e-25 118.2 72 73.6
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 8.4e-23 111.3 201 37.3
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 2.7e-21 106.3 183 34.4
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 6.0e-21 105.1 130 39.2
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.3e-20 104.0 183 33.3
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 1.1e-19 100.9 60 83.3
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.1e-19 100.9 183 32.8
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 2.1e-18 96.7 135 43.7
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 4.8e-18 95.5 60 78.3
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 3.4e-16 89.4 77 59.7
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 7.6e-16 88.2 58 74.1
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 4.9e-15 85.5 179 36.9
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 2.8e-10 69.7 59 59.3
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 2.8e-10 69.7 174 28.7
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 1.8e-09 67.0 59 57.6
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 2.2e-07 60.1 33 84.8
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 2.2e-07 60.1 33 84.8
Lsat_1_v5_gn_4_168241 Lactuca sativa HOM05D035019 ORTHO05D008519 4.9e-07 58.9 33 84.8
AagrBONN_evm.TU.Sc2ySwM_228.4669 Anthoceros agrestis HOM05D006972 ORTHO05D008519 1.9e-06 57.0 64 40.6
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 5.5e-06 55.5 33 69.7


User provided reference genes

Program Settings