Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 5.0e-91 337.8 178 100.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.4e-63 245.0 175 73.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 2.4e-61 239.2 178 70.2
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 7.1e-61 237.7 172 69.8
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 4.6e-60 235.0 178 67.4
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.7e-59 233.0 178 66.3
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.3e-59 232.6 178 66.3
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.6e-58 228.0 178 66.3
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.6e-58 227.3 178 66.9
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 6.2e-57 224.6 178 64.6
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.4e-56 222.6 178 63.5
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 4.0e-56 221.9 184 65.2
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.2e-55 220.3 178 62.9
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.9e-54 215.7 171 64.9
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.9e-54 214.9 179 62.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.9e-54 214.9 179 61.5
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 8.4e-54 214.2 171 63.2
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.4e-54 214.2 178 62.4
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 1.1e-53 213.8 178 64.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.4e-53 213.4 171 65.5
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.4e-53 212.6 173 64.2
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.4e-53 212.6 172 64.0
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 5.4e-53 211.5 171 63.2
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.3e-53 210.7 179 64.8
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.2e-52 210.3 171 64.3
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.6e-52 209.9 168 65.5
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 3.5e-52 208.8 171 63.2
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.0e-52 208.0 179 60.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.0e-51 207.2 167 65.9
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.0e-51 207.2 167 65.9
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.0e-51 207.2 168 63.7
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.8e-51 206.5 168 63.7
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 3.0e-51 205.7 170 63.5
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.7e-49 198.7 177 59.9
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 8.1e-49 197.6 166 62.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.8e-48 196.4 151 65.6
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.4e-48 196.1 178 57.3
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 2.4e-48 196.1 179 58.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.1e-48 195.7 168 60.7
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 6.9e-48 194.5 175 56.0
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-47 193.4 148 67.6
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.5e-47 193.4 173 57.2
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.9e-46 189.1 173 56.6
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.9e-46 189.1 200 53.0
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 4.9e-46 188.3 174 55.2
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 4.9e-46 188.3 165 60.0
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-45 187.2 149 66.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.1e-45 187.2 149 66.4
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 2.4e-45 186.0 171 57.3
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 4.2e-45 185.3 171 55.6
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.2e-45 185.3 173 56.1
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.5e-45 184.9 157 60.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.6e-44 183.3 173 56.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 2.1e-44 183.0 173 55.5
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.1e-44 183.0 175 58.3
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 3.5e-44 182.2 173 54.9
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 4.6e-44 181.8 177 54.2
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 6.0e-44 181.4 172 52.3
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 6.0e-44 181.4 181 53.0
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 7.9e-44 181.0 168 57.1
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.0e-43 180.6 164 56.7
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.0e-43 180.6 164 56.7
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.3e-43 180.3 171 55.0
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.8e-43 179.9 173 54.3
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.8e-43 179.9 173 56.1
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 5.1e-43 178.3 175 54.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 8.7e-43 177.6 163 58.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.5e-42 176.8 173 52.6
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.9e-42 176.4 176 55.1
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.9e-42 176.4 148 62.8
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.3e-42 175.6 149 59.1
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.3e-41 173.7 153 60.1
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 2.8e-41 172.6 173 53.2
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.8e-41 172.6 176 51.7
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 2.8e-41 172.6 175 53.1
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.7e-41 172.2 175 52.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.7e-41 172.2 175 52.6
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.4e-40 170.2 168 56.0
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 1.8e-40 169.9 154 57.1
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.8e-40 169.9 165 54.5
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.4e-40 169.5 174 53.4
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 5.3e-40 168.3 165 55.2
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 5.3e-40 168.3 174 53.4
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.0e-40 167.5 135 63.0
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 9.0e-40 167.5 164 56.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.5e-39 166.8 189 49.2
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 3.4e-39 165.6 175 51.4
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.5e-39 165.2 218 46.3
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 5.8e-39 164.9 165 50.3
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 1.0e-38 164.1 179 50.8
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.9e-38 162.5 158 55.1
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.9e-38 161.8 213 45.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 6.5e-38 161.4 144 59.0
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 6.5e-38 161.4 179 49.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.4e-38 161.0 171 47.4
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.9e-37 159.8 158 53.8
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.2e-37 159.1 173 49.7
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.2e-36 157.1 221 43.9
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.2e-36 157.1 131 61.1
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.6e-36 156.8 151 55.0
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 2.7e-36 156.0 172 48.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.7e-36 156.0 147 55.8
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.7e-36 156.0 165 47.9
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.5e-36 155.6 159 54.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.0e-36 154.8 177 47.5
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 7.9e-36 154.5 141 56.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.0e-35 154.1 152 53.9
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.0e-35 154.1 175 50.3
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.3e-35 152.9 131 59.5
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.3e-35 152.9 166 47.6
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 6.7e-35 151.4 133 61.7
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.3e-34 149.1 134 59.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.7e-34 148.3 168 49.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.7e-34 148.3 168 49.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.4e-34 147.9 160 51.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.4e-34 147.9 154 55.2
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 9.7e-34 147.5 164 50.6
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.8e-33 145.2 139 56.8
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 8.2e-33 144.4 179 48.6
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 1.8e-32 143.3 167 48.5
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.4e-32 142.9 132 59.1
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.9e-32 141.4 178 48.3
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.0e-31 139.8 176 45.5
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 5.9e-31 138.3 165 49.1
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.2e-30 136.3 177 46.3
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 6.5e-30 134.8 271 35.4
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 8.5e-30 134.4 143 49.7
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.1e-29 134.0 176 48.3
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.9e-29 133.3 115 60.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.3e-27 127.1 179 40.2
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 1.8e-27 126.7 86 68.6
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 3.9e-27 125.6 84 66.7
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.5e-26 123.6 154 44.8
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 2.5e-26 122.9 91 65.9
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 6.9e-24 114.8 108 58.3
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 6.7e-19 98.2 83 62.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.3e-17 94.0 85 62.4
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.3e-17 94.0 78 65.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.8e-17 92.8 78 65.4
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 8.2e-17 91.3 142 44.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.1e-16 87.8 84 61.9
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 1.2e-15 87.4 169 33.7
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 3.4e-15 85.9 87 62.1
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 4.5e-15 85.5 111 51.4
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.7e-14 83.6 90 51.1
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.5e-13 79.7 142 36.6
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.6e-12 77.0 165 29.1
Cre09.g387504 Chlamydomonas reinhardtii HOM05D004607 ORTHO05D005836 1.1e-08 64.3 177 28.2
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.4e-08 63.9 60 56.7
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.6e-07 60.5 51 66.7
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 7.7e-07 58.2 69 50.7
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 1.0e-06 57.8 68 51.5


User provided reference genes

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