Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.1e-267 926.8 798 100.0
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.1e-165 587.0 799 56.1
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.8e-157 560.1 799 61.8
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.3e-153 545.0 802 55.0
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.6e-152 544.3 807 56.5
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.5e-150 537.0 791 56.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 3.3e-150 536.6 793 63.1
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 2.8e-149 533.5 787 59.3
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 6.2e-149 532.3 801 59.7
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.2e-145 520.0 804 55.2
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 2.7e-144 516.9 801 56.1
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.3e-143 514.6 759 61.7
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.3e-143 513.8 769 60.2
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.0e-143 513.5 806 65.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.0e-143 513.5 806 65.4
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.0e-143 513.5 738 58.8
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.9e-142 510.8 803 61.9
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 5.7e-142 509.2 507 59.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.7e-142 509.2 793 58.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.7e-142 509.2 785 55.0
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.3e-141 508.1 800 56.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 6.3e-141 505.8 853 59.0
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.1e-140 505.0 801 51.9
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 3.1e-140 503.4 802 58.0
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 3.1e-140 503.4 803 60.8
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 5.3e-140 502.7 835 52.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.5e-139 501.1 793 59.5
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.5e-139 501.1 784 58.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.5e-139 501.1 799 55.3
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 3.4e-139 500.0 750 59.5
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.7e-138 497.7 793 58.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 6.5e-138 495.7 772 53.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.2e-137 493.0 776 64.2
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 5.5e-137 492.7 783 62.8
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 9.4e-137 491.9 763 63.8
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.2e-136 491.5 743 57.9
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.2e-136 491.5 793 58.5
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.6e-136 491.1 803 57.2
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.6e-136 491.1 787 52.7
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.1e-136 490.7 788 60.3
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 4.6e-136 489.6 773 56.4
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 4.6e-136 489.6 807 57.7
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 7.9e-136 488.8 743 57.6
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.8e-135 487.6 801 58.7
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.7e-135 485.7 801 59.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 3.3e-134 483.4 809 60.4
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 7.4e-134 482.3 798 58.8
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 1.3e-133 481.5 810 57.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 6.3e-133 479.2 788 56.5
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.4e-132 478.0 793 58.6
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.8e-132 477.6 760 59.6
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 5.3e-132 476.1 796 52.1
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 9.1e-132 475.3 800 53.5
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 1.0e-130 471.9 791 54.9
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.3e-130 471.5 799 50.2
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.3e-130 471.5 803 59.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 3.8e-130 469.9 803 59.0
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 9.4e-129 465.3 777 49.0
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.7e-128 463.0 802 55.2
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 2.3e-127 460.7 805 54.2
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 3.0e-127 460.3 798 54.6
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.5e-126 458.0 770 62.2
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.0e-126 457.6 803 53.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 3.7e-125 453.4 790 54.3
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.0e-123 447.6 770 56.8
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.6e-123 447.2 777 59.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.3e-122 444.9 793 56.9
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 2.2e-122 444.1 801 53.1
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.1e-121 441.8 756 56.1
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.1e-121 441.8 502 69.3
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.5e-121 439.5 744 58.6
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.2e-120 438.3 787 53.7
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.7e-120 437.2 762 56.7
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 3.6e-120 436.8 734 59.4
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 3.6e-120 436.8 734 59.4
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.5e-118 431.4 735 54.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.0e-118 431.0 741 58.3
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.0e-118 431.0 749 58.2
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.3e-116 422.9 802 53.1
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 5.5e-113 412.9 763 60.3
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.6e-112 411.4 809 53.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.7e-112 410.6 819 49.3
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.7e-112 410.6 790 53.0
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 5.2e-111 406.4 792 55.1
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.3e-108 396.4 772 49.1
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.2e-104 385.2 777 60.2
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.6e-104 384.8 803 53.5
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.0e-103 382.1 807 50.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 5.2e-103 379.8 780 47.3
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 3.4e-102 377.1 776 49.6
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.9e-98 364.0 773 52.1
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 3.8e-98 363.6 800 50.2
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 9.5e-97 359.0 807 48.5
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.8e-95 354.8 829 49.9
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.0e-94 351.3 810 51.0
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.7e-93 348.2 745 49.3
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 3.7e-93 347.1 326 61.3
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 2.3e-79 301.2 511 41.5
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 4.9e-69 266.9 810 45.6
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.9e-66 257.3 512 42.0
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.9e-66 257.3 275 54.5
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 3.3e-65 254.2 508 45.3
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 8.1e-64 249.6 514 36.8
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.8e-63 246.5 258 55.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 4.3e-57 227.3 190 70.5
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.4e-55 222.2 568 58.1
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.9e-52 211.8 202 60.4
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-51 209.1 568 57.9
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.3e-50 205.7 515 34.0
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.1e-47 196.1 527 63.8
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.8e-42 178.7 132 75.8
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.5e-41 175.6 515 32.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.1e-40 171.8 374 65.8
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-37 160.2 310 43.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 8.4e-37 159.8 211 52.1
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.1e-36 159.5 137 70.8
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.0e-30 138.7 108 72.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 5.8e-30 137.1 123 66.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-25 122.9 178 47.2
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 5.3e-23 114.0 186 46.2
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 2.9e-21 108.2 133 51.9
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 1.1e-20 106.3 95 82.1
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 8.8e-18 96.7 124 50.0
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.7e-17 94.0 108 51.9
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 5.3e-15 87.4 81 55.6
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-14 85.9 137 43.1
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.6e-14 85.1 144 39.6
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.4e-12 79.3 153 41.8
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 6.1e-11 73.9 79 55.7
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.1e-09 69.7 133 34.6
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.5e-09 69.3 42 81.0
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.2e-08 65.5 56 64.3
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 1.8e-07 62.4 47 70.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.1e-07 61.2 91 40.7


User provided reference genes

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