Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 5.5e-29 130.2 61 100.0
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 2.2e-17 91.7 58 67.2
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 3.4e-15 84.3 56 69.6
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 4.5e-15 84.0 54 68.5
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 7.7e-15 83.2 56 67.9
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.3e-14 82.4 56 67.9
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 1.3e-14 82.4 56 64.3
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 1.7e-14 82.0 54 66.7
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.7e-14 82.0 54 68.5
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.7e-14 82.0 54 66.7
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 2.2e-14 81.6 56 60.7
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 2.2e-14 81.6 57 63.2
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.2e-14 81.6 60 61.7
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.9e-14 81.3 54 66.7
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.9e-14 81.3 54 64.8
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.9e-14 81.3 56 64.3
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.9e-14 81.3 56 64.3
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 2.9e-14 81.3 63 60.3
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 3.8e-14 80.9 54 66.7
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 3.8e-14 80.9 53 66.0
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 3.8e-14 80.9 56 64.3
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 5.0e-14 80.5 56 66.1
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 5.0e-14 80.5 56 66.1
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 5.0e-14 80.5 59 61.0
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 5.0e-14 80.5 54 66.7
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.5e-14 80.1 54 66.7
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 6.5e-14 80.1 54 66.7
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 6.5e-14 80.1 54 66.7
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.5e-14 79.7 56 64.3
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.5e-14 79.7 56 64.3
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.5e-14 79.7 56 64.3
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 8.5e-14 79.7 56 64.3
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 8.5e-14 79.7 54 64.8
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 66.7
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.1e-13 79.3 56 60.7
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 66.7
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 64.8
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 1.1e-13 79.3 63 58.7
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.1e-13 79.3 56 64.3
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 64.8
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 1.1e-13 79.3 56 66.1
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 1.1e-13 79.3 54 64.8
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.1e-13 79.3 56 66.1
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.1e-13 79.3 56 66.1
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.4e-13 79.0 56 60.7
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.4e-13 79.0 56 66.1
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.4e-13 79.0 52 59.6
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 64.8
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 64.8
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 1.9e-13 78.6 57 61.4
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 64.3
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 62.5
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 64.8
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.9e-13 78.6 54 64.8
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 1.9e-13 78.6 56 64.3
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.5e-13 78.2 56 64.3
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 2.5e-13 78.2 49 69.4
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 2.5e-13 78.2 57 61.4
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 2.5e-13 78.2 54 66.7
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 3.2e-13 77.8 54 64.8
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.2e-13 77.4 54 64.8
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 4.2e-13 77.4 54 64.8
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 4.2e-13 77.4 54 64.8
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 5.5e-13 77.0 57 63.2
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 5.5e-13 77.0 54 66.7
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 7.2e-13 76.6 54 64.8
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.2e-13 76.6 56 62.5
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 7.2e-13 76.6 54 64.8
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 7.2e-13 76.6 54 64.8
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 7.2e-13 76.6 54 57.4
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 9.4e-13 76.3 54 63.0
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 9.4e-13 76.3 57 59.6
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.2e-12 75.9 57 63.2
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.2e-12 75.9 56 62.5
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.2e-12 75.9 54 57.4
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 1.6e-12 75.5 54 63.0
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.6e-12 75.5 53 64.2
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.6e-12 75.5 54 64.8
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 1.6e-12 75.5 56 58.9
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.1e-12 75.1 54 63.0
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 2.1e-12 75.1 54 61.1
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 2.1e-12 75.1 56 62.5
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.1e-12 75.1 55 61.8
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.7e-12 74.7 56 60.7
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 2.7e-12 74.7 54 59.3
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 3.6e-12 74.3 55 63.6
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 3.6e-12 74.3 54 61.1
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 3.6e-12 74.3 54 63.0
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 3.6e-12 74.3 54 61.1
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 4.6e-12 73.9 54 59.3
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 4.6e-12 73.9 54 63.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 4.6e-12 73.9 54 61.1
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 4.6e-12 73.9 54 61.1
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 6.1e-12 73.6 54 59.3
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 6.1e-12 73.6 53 58.5
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 7.9e-12 73.2 56 58.9
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-12 73.2 56 58.9
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-12 73.2 56 58.9
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 7.9e-12 73.2 56 58.9
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.9e-12 73.2 57 57.9
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 7.9e-12 73.2 57 57.9
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 7.9e-12 73.2 57 57.9
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 7.9e-12 73.2 56 58.9
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 1.0e-11 72.8 57 63.2
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.4e-11 72.4 54 59.3
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.4e-11 72.4 54 59.3
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.4e-11 72.4 56 57.1
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 1.4e-11 72.4 56 58.9
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.8e-11 72.0 54 59.3
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 2.3e-11 71.6 62 54.8
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 2.3e-11 71.6 54 57.4
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 2.3e-11 71.6 57 57.9
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.0e-11 71.2 54 59.3
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 3.0e-11 71.2 60 55.0
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 3.0e-11 71.2 60 55.0
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 6.7e-11 70.1 54 59.3
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 1.5e-10 68.9 56 55.4
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 1.5e-10 68.9 54 59.3
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 4.4e-10 67.4 60 51.7
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 7.4e-10 66.6 50 60.0
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 2.8e-09 64.7 42 69.0
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 6.3e-09 63.5 40 67.5
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 4.1e-08 60.8 56 51.8
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 9.1e-08 59.7 56 50.0
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 1.3e-06 55.8 28 78.6
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.0e-06 53.9 49 51.0
DCAR_012810 Daucus carota HOM05D002570 ORTHO05D002689 8.5e-06 53.1 56 39.3
SEGI_39026 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 8.5e-06 53.1 31 71.0


User provided reference genes

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