Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 2.7e-191 671.8 327 100.0
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 3.5e-122 442.2 317 65.9
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 2.3e-118 429.5 327 65.1
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 1.5e-117 426.8 327 64.8
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 2.0e-117 426.4 320 63.1
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 3.2e-115 419.1 327 63.0
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 2.5e-112 409.5 327 63.0
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 1.2e-111 407.1 312 63.1
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 2.3e-110 402.9 315 61.6
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 2.2e-108 396.4 317 61.8
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.1e-107 394.0 315 60.0
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.4e-107 393.7 327 59.6
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.2e-106 390.6 317 61.2
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 1.2e-106 390.6 327 59.0
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 1.6e-106 390.2 321 59.5
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 1.6e-106 390.2 314 61.1
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.1e-106 389.8 327 59.6
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 6.0e-106 388.3 318 60.1
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 6.6e-105 384.8 327 59.9
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 1.1e-104 384.0 325 59.7
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.9e-104 383.3 317 61.5
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 1.9e-104 383.3 324 59.9
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 2.5e-104 382.9 319 59.6
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 5.6e-104 381.7 322 58.7
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 7.3e-104 381.3 312 61.5
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 4.7e-103 378.6 312 59.9
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 6.2e-103 378.3 323 57.3
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 1.4e-102 377.1 313 60.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 2.3e-102 376.3 320 58.8
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 2.3e-102 376.3 315 60.6
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 4.0e-102 375.6 317 56.5
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 4.0e-102 375.6 320 58.8
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 4.0e-102 375.6 312 58.3
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 5.2e-102 375.2 319 58.6
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 6.8e-102 374.8 318 59.1
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 6.8e-102 374.8 314 59.2
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 6.8e-102 374.8 324 59.3
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 6.8e-102 374.8 314 59.9
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 8.9e-102 374.4 332 57.8
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 8.9e-102 374.4 311 57.6
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 8.9e-102 374.4 314 59.9
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 2.6e-101 372.9 329 57.4
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 3.4e-101 372.5 329 57.4
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 4.4e-101 372.1 309 60.2
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 4.4e-101 372.1 314 56.7
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 1.3e-100 370.5 316 57.3
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 2.2e-100 369.8 314 59.2
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 2.2e-100 369.8 311 56.9
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 2.2e-100 369.8 320 58.8
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 3.7e-100 369.0 311 57.2
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 1.1e-99 367.5 314 58.6
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.1e-99 367.5 309 58.6
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 1.4e-99 367.1 327 57.8
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 9.2e-99 364.4 325 56.3
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.2e-98 364.0 310 58.1
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 1.6e-98 363.6 328 56.1
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 5.1e-97 358.6 328 55.8
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 2.5e-96 356.3 359 52.4
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 9.6e-96 354.4 328 55.5
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 2.8e-95 352.8 404 47.5
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 8.1e-95 351.3 309 58.3
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 8.1e-95 351.3 244 68.9
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.1e-94 350.9 330 56.1
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 5.2e-94 348.6 318 54.1
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 5.2e-94 348.6 312 54.8
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.5e-93 347.1 280 59.3
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 3.4e-93 345.9 309 57.6
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 7.6e-93 344.7 385 48.6
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 9.9e-93 344.4 316 55.4
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.7e-92 343.6 325 55.1
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.9e-91 340.1 289 57.1
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 1.5e-88 330.5 313 54.0
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 4.3e-88 328.9 312 54.5
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 1.3e-87 327.4 273 58.2
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 4.8e-87 325.5 301 56.1
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 4.8e-87 325.5 324 52.8
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 5.3e-86 322.0 328 49.1
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 9.0e-86 321.2 319 53.0
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 6.4e-84 315.1 214 65.9
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.2e-83 312.8 284 56.0
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 5.4e-83 312.0 353 52.4
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 7.1e-83 311.6 217 63.6
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 2.7e-82 309.7 195 73.8
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 2.7e-82 309.7 215 65.1
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 6.0e-82 308.5 217 62.7
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.5e-77 293.9 409 42.5
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.1e-75 287.7 353 49.3
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 3.5e-74 282.7 198 65.7
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 3.5e-74 282.7 320 45.6
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 9.0e-70 268.1 307 46.3
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.6e-69 266.5 315 41.9
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 3.9e-65 252.7 247 54.7
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 2.8e-63 246.5 388 41.5
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 2.4e-62 243.4 237 55.3
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 1.5e-61 240.7 317 45.1
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 8.5e-52 208.4 338 38.5
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 7.2e-51 205.3 194 46.9
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 3.0e-49 199.9 176 59.1
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 8.2e-47 191.8 218 48.6
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.4e-46 191.0 255 43.5
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 3.1e-46 189.9 170 57.6
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 1.0e-44 184.9 187 53.5
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 1.4e-43 181.0 238 45.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 1.4e-43 181.0 238 45.0
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 1.4e-43 181.0 210 47.1
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 1.9e-43 180.6 118 65.3
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 7.9e-42 175.3 205 44.9
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 3.3e-40 169.9 258 43.0
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.8e-38 164.1 181 50.3
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 2.4e-38 163.7 224 44.2
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.5e-37 161.0 102 67.6
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 7.2e-35 152.1 186 46.2
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 2.3e-33 147.1 182 48.4
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 8.8e-33 145.2 188 38.8
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 7.2e-27 125.6 92 59.8
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 3.1e-22 110.2 99 53.5
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 1.5e-19 101.3 154 42.9
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 4.2e-19 99.8 157 39.5
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 1.6e-18 97.8 99 47.5
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 5.0e-12 76.3 137 32.8
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 1.6e-10 71.2 94 45.7
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 1.5e-08 64.7 134 32.8
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 3.4e-08 63.5 124 36.3
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 9.8e-08 62.0 124 34.7
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 1.3e-07 61.6 106 35.8
Potri.007G025600 Populus trichocarpa HOM05D005677 ORTHO05D006966 1.3e-07 61.6 115 32.2
Duzib147G0715 Durio zibethinus HOM05D005677 ORTHO05D006966 1.7e-07 61.2 108 36.1
Ca_22266_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 2.2e-07 60.8 102 36.3
Ca_22280_v3 Cicer arietinum L. HOM05D005677 ORTHO05D006966 2.2e-07 60.8 102 36.3
COL.COLO4_22080 Corchorus olitorius HOM05D005677 ORTHO05D006966 2.9e-07 60.5 113 35.4
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 2.9e-07 60.5 139 32.4
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 2.9e-07 60.5 124 33.9
Lalb_Chr16g0388501 Lupinus albus HOM05D005677 ORTHO05D006966 3.7e-07 60.1 101 37.6
MCO04G411 Micromonas commoda HOM05D000874 ORTHO05D001049 6.4e-07 59.3 122 29.5
Psat4g092640 Pisum sativum HOM05D005677 ORTHO05D006966 6.4e-07 59.3 106 35.8
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 6.4e-07 59.3 159 30.2
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 1.1e-06 58.5 148 29.7
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 1.1e-06 58.5 122 32.0
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 1.1e-06 58.5 167 27.5
Thhalv10010630m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 1.4e-06 58.2 177 26.0
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.4e-06 58.2 147 28.6
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 1.4e-06 58.2 153 30.1
Eucgr.L02813 Eucalyptus grandis HOM05D005677 ORTHO05D006966 1.8e-06 57.8 114 33.3
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.8e-06 57.8 178 25.3
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 1.8e-06 57.8 144 28.5
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 2.4e-06 57.4 112 30.4
Gohir.A11G184300 Gossypium hirsutum HOM05D005677 ORTHO05D006966 2.4e-06 57.4 139 29.5
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 2.4e-06 57.4 133 27.8
Eucgr.H01270 Eucalyptus grandis HOM05D005677 ORTHO05D006966 3.2e-06 57.0 114 33.3
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 3.2e-06 57.0 144 28.5
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 4.1e-06 56.6 102 35.3
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 4.1e-06 56.6 151 28.5
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 4.1e-06 56.6 138 29.0
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 4.1e-06 56.6 147 27.9
VMungo0251G0356 Vigna mungo HOM05D005677 ORTHO05D006966 4.1e-06 56.6 105 35.2
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 5.4e-06 56.2 163 23.9
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 5.4e-06 56.2 154 32.5
Phvul.003G253400 Phaseolus vulgaris HOM05D005677 ORTHO05D006966 5.4e-06 56.2 104 34.6
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 5.4e-06 56.2 139 27.3
Thhalv10003267m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 7.0e-06 55.8 132 26.5
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 7.0e-06 55.8 115 33.9
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 7.0e-06 55.8 170 27.1
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 9.2e-06 55.5 119 28.6
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 9.2e-06 55.5 146 26.7
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 9.2e-06 55.5 145 29.0
Manes.01G135600 Manihot esculenta HOM05D005677 ORTHO05D006966 9.2e-06 55.5 103 36.9
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 9.2e-06 55.5 121 32.2


User provided reference genes

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