Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 4.0e-191 671.4 374 100.0
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 7.1e-103 378.3 386 62.7
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 4.3e-100 369.0 377 62.1
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-99 367.5 384 64.3
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.1e-99 366.7 384 63.0
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.8e-96 355.9 407 60.2
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.1e-95 354.4 378 61.4
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.9e-95 353.6 379 62.8
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 7.8e-94 348.2 379 60.4
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.3e-93 346.7 389 56.8
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.3e-92 342.8 381 59.3
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.3e-92 342.8 381 61.2
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.2e-89 334.3 382 59.7
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.9e-89 331.3 378 57.9
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.3e-88 330.9 377 57.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.4e-88 328.2 378 58.2
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.4e-87 326.6 375 60.0
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 7.8e-86 321.6 375 57.6
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.7e-85 320.5 382 59.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 2.3e-85 320.1 387 60.7
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 6.6e-85 318.5 382 58.1
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.3e-84 315.1 379 54.9
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 7.3e-84 315.1 387 56.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 7.3e-84 315.1 381 57.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 6.2e-83 312.0 449 51.9
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 6.2e-83 312.0 379 59.4
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.1e-83 311.6 387 56.6
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 3.1e-82 309.7 382 55.2
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.1e-82 309.7 387 55.3
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.0e-82 309.3 386 56.2
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-81 307.4 379 59.4
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.4e-81 306.2 391 56.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 3.4e-81 306.2 350 56.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.6e-81 305.1 400 52.8
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.9e-79 300.4 382 56.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 2.4e-79 300.1 392 53.6
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.2e-79 299.7 374 55.1
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 3.2e-79 299.7 383 56.7
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 3.2e-79 299.7 378 54.5
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 5.4e-79 298.9 382 54.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.2e-78 297.7 380 54.7
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 3.5e-78 296.2 382 55.0
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 6.0e-78 295.4 342 59.9
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.8e-77 293.9 392 54.1
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 4.3e-76 289.3 388 51.8
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.6e-76 288.9 390 54.6
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 7.4e-76 288.5 388 51.8
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.6e-76 288.1 386 55.2
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.6e-75 287.3 388 56.2
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.6e-75 287.3 385 53.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 2.1e-75 287.0 397 56.2
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.8e-75 285.8 379 55.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 5.3e-74 282.3 383 56.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-73 281.2 397 52.6
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-72 277.3 381 54.6
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 2.2e-72 276.9 341 56.0
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.8e-72 276.2 379 52.8
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 1.1e-71 274.6 393 53.7
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.5e-71 273.5 401 52.4
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.2e-71 273.1 293 60.1
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 5.5e-71 272.3 390 53.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 9.3e-71 271.6 382 52.6
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.6e-70 270.8 376 54.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.6e-70 269.2 341 55.4
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 7.9e-70 268.5 379 52.2
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 3.0e-69 266.5 403 50.1
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.9e-68 263.8 385 48.6
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.5e-68 263.5 341 53.7
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.3e-67 261.2 350 52.0
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.1e-66 258.1 386 51.0
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.4e-66 257.7 378 51.3
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 9.0e-66 255.0 375 50.4
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 9.0e-66 255.0 382 51.6
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.6e-65 253.4 377 47.5
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 5.5e-63 245.7 378 48.1
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-62 243.8 380 49.7
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.3e-61 241.1 379 46.7
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.9e-61 239.6 331 51.4
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 5.1e-61 239.2 341 52.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.5e-60 237.7 379 49.9
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.5e-60 237.7 377 52.3
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 2.5e-60 236.9 383 50.7
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.3e-60 236.5 376 49.5
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 4.3e-60 236.1 380 46.3
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 7.4e-60 235.3 378 52.4
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.8e-59 233.4 381 48.0
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 6.3e-59 232.3 257 58.0
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.8e-58 230.7 370 44.9
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.4e-58 230.3 386 47.9
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.1e-58 229.9 378 50.8
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 5.3e-58 229.2 358 50.3
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 6.9e-58 228.8 389 49.1
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.9e-58 228.8 379 49.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-57 227.6 378 51.1
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.6e-57 226.9 375 45.1
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.6e-57 226.9 378 50.0
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.7e-57 225.3 379 49.6
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 3.8e-56 223.0 380 46.3
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 2.5e-55 220.3 382 49.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.5e-55 219.2 382 44.2
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 9.4e-55 218.4 377 49.1
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.6e-54 217.6 382 44.0
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 3.6e-54 216.5 341 44.6
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 4.6e-54 216.1 377 45.6
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 7.9e-54 215.3 384 45.8
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.0e-53 214.9 456 41.0
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.8e-53 211.8 392 47.7
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-52 211.1 457 40.7
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.5e-52 210.3 385 43.9
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 4.3e-52 209.5 333 44.4
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.7e-51 206.5 379 47.0
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 4.8e-51 206.1 374 45.7
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 8.2e-51 205.3 382 44.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.4e-50 204.5 186 67.2
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.1e-50 203.4 387 44.2
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.1e-50 203.0 389 47.0
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 5.3e-50 202.6 383 40.7
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 3.4e-49 199.9 382 45.5
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 7.7e-49 198.7 344 46.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.0e-48 198.4 381 45.4
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-48 197.6 330 49.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-48 196.8 379 46.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.9e-47 194.1 330 48.5
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 2.5e-47 193.7 381 46.5
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.5e-47 193.7 378 43.7
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.3e-45 187.2 347 43.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 4.4e-44 183.0 358 42.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 3.7e-43 179.9 341 42.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 3.7e-43 179.9 325 42.8
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 5.3e-42 176.0 378 45.0
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.5e-41 173.3 375 40.0
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.5e-41 173.3 374 43.0
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.7e-40 171.0 352 38.9
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.0e-40 169.5 338 39.6
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 9.4e-39 165.2 243 50.6
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.1e-38 164.1 392 37.0
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.3e-37 160.6 375 41.9
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 3.9e-37 159.8 400 40.0
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.1e-36 158.3 379 39.3
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.5e-36 157.9 322 39.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 2.0e-36 157.5 373 37.5
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 3.3e-36 156.8 363 43.0
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.7e-36 156.0 375 42.1
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 7.4e-36 155.6 349 38.1
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.2e-35 154.1 393 39.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 8.2e-35 152.1 257 44.0
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.5e-33 146.7 310 40.0
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.2e-32 144.1 390 38.2
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.5e-31 140.6 221 47.5
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.5e-31 140.6 338 37.0
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 3.2e-31 140.2 219 48.4
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.2e-30 138.3 308 38.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.1e-30 137.5 308 37.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 8.8e-29 132.1 285 43.2
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.4e-28 130.2 343 36.4
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.3e-27 128.3 279 41.2
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 3.7e-27 126.7 228 45.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-26 125.2 344 36.0
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.1e-26 125.2 344 36.0
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 5.3e-26 122.9 221 44.8
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 9.1e-26 122.1 221 45.2
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 9.1e-26 122.1 221 45.2
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 2.7e-25 120.6 134 64.2
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.0e-24 118.6 126 57.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.0e-24 116.3 228 44.3
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.0e-24 116.3 228 44.3
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 4.4e-20 103.2 243 36.6
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 7.5e-20 102.4 356 35.1
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 6.3e-19 99.4 305 32.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.9e-17 92.8 219 43.4
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.2e-15 85.9 347 32.9
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 1.2e-14 85.1 323 31.9
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-10 71.6 58 67.2
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.2e-10 70.5 58 65.5
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 1.7e-08 64.7 76 51.3
Nn1g06616 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.3e-08 64.3 122 50.8
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.3e-08 64.3 66 50.0
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 5.6e-07 59.7 429 28.0
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 2.1e-06 57.8 265 29.4
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.1e-06 57.8 105 41.0
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.8e-06 57.4 31 93.5


User provided reference genes

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