Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 9.4e-53 209.9 106 100.0
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 8.9e-19 97.1 94 56.4
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 3.4e-18 95.1 92 55.4
Oeu064592.1 Olea europaea HOM05D008224 ORTHO05D010083 4.4e-18 94.7 91 56.0
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 7.5e-18 94.0 92 54.3
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 1.9e-16 89.4 93 53.8
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 4.1e-16 88.2 85 55.3
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 5.4e-16 87.8 85 55.3
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 2.7e-15 85.5 93 50.5
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 2.3e-14 82.4 100 53.0
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 3.9e-14 81.6 89 50.6
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 3.9e-14 81.6 92 45.7
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 5.1e-14 81.3 85 54.1
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 1.5e-13 79.7 92 50.0
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 1.5e-13 79.7 87 51.7
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.9e-13 79.3 87 54.0
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 1.9e-13 79.3 87 54.0
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 2.5e-13 79.0 94 46.8
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 2.5e-13 79.0 94 47.9
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 3.3e-13 78.6 87 54.0
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 5.6e-13 77.8 88 53.4
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 7.3e-13 77.4 89 51.7
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 2.1e-12 75.9 87 48.3
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 3.6e-12 75.1 88 47.7
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 3.6e-12 75.1 88 47.7
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 4.7e-12 74.7 93 47.3
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 1.1e-11 73.6 93 48.4
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 1.1e-11 73.6 87 49.4
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 1.1e-11 73.6 92 45.7
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 1.8e-11 72.8 76 53.9
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 3.1e-11 72.0 95 44.2
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 4.0e-11 71.6 91 45.1
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 4.0e-11 71.6 87 47.1
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 5.2e-11 71.2 99 47.5
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 5.2e-11 71.2 88 48.9
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 8.9e-11 70.5 98 49.0
Gorai.003G009900 Gossypium raimondii HOM05D008224 ORTHO05D010083 1.5e-10 69.7 87 47.1
Hma1.2p1_0956F.1_g241380 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 2.0e-10 69.3 84 48.8
Hma1.2p1_2239F.1_g317816 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 2.0e-10 69.3 84 48.8
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 2.6e-10 68.9 82 48.8
ATR0481G006 Amborella trichopoda HOM05D008224 ORTHO05D010083 3.4e-10 68.6 88 45.5
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 5.8e-10 67.8 84 42.9
ATR0627G002 Amborella trichopoda HOM05D008224 ORTHO05D010083 7.6e-10 67.4 88 44.3
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 7.6e-10 67.4 87 44.8
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 1.7e-09 66.2 100 43.0
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 2.2e-09 65.9 88 42.0
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 2.9e-09 65.5 84 41.7
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 6.4e-09 64.3 85 47.1
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 8.4e-09 63.9 68 48.5
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 8.4e-09 63.9 79 51.9
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.9e-08 62.8 88 43.2
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 1.9e-08 62.8 84 44.0
BcaB02g10776 Brassica carinata HOM05D014245 ORTHO05D010083 4.1e-08 61.6 86 44.2
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 4.1e-08 61.6 87 41.4
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 5.4e-08 61.2 99 48.5
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 1.2e-07 60.1 90 42.2
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 1.6e-07 59.7 68 52.9
ECA246G4291 Erigeron canadensis HOM05D008224 ORTHO05D010083 1.6e-07 59.7 109 39.4
EL10Ac6g15476 Beta vulgaris HOM05D008224 ORTHO05D010083 2.1e-07 59.3 93 41.9
Actinidia17446 Actinidia chinensis HOM05D008224 ORTHO05D010083 6.0e-07 57.8 114 39.5
A06p26690 Brassica napus HOM05D014245 ORTHO05D010083 6.0e-07 57.8 88 42.0
AL8G45290 Arabidopsis lyrata HOM05D014245 ORTHO05D010083 1.7e-06 56.2 94 40.4
Sed0025479 Sechium edule HOM05D008224 ORTHO05D010083 3.0e-06 55.5 76 42.1
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 6.6e-06 54.3 82 46.3


User provided reference genes

Program Settings