Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 4.2e-107 391.3 194 100.0
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.7e-53 212.6 135 71.9
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 5.9e-53 211.5 157 66.9
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.9e-52 209.1 158 66.5
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.9e-52 209.1 147 70.7
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.6e-50 203.4 160 64.4
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.0e-49 200.7 145 68.3
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.8e-49 199.9 133 70.7
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 5.2e-49 198.4 138 68.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.7e-47 193.4 141 66.7
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 2.9e-47 192.6 184 55.4
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.1e-46 190.7 154 61.0
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 4.1e-46 188.7 145 64.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.1e-46 188.7 169 58.0
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 1.2e-45 187.2 175 53.7
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.5e-45 185.7 181 54.7
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 4.6e-45 185.3 135 62.2
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.3e-44 183.7 182 54.9
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 8.6e-44 181.0 175 51.4
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 8.6e-44 181.0 155 54.8
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.1e-43 180.6 171 55.0
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 2.5e-43 179.5 111 75.7
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 7.3e-43 177.9 189 53.4
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 7.3e-43 177.9 194 52.6
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.2e-42 177.2 160 55.0
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.6e-42 176.8 143 61.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.1e-42 176.4 188 54.3
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.8e-42 176.0 162 58.0
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 8.0e-42 174.5 190 52.1
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.4e-41 173.7 162 54.3
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.8e-41 173.3 157 53.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.8e-41 173.3 184 50.5
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.3e-41 172.9 157 54.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 3.1e-41 172.6 142 57.7
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 6.8e-41 171.4 168 55.4
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 8.9e-41 171.0 138 59.4
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.2e-40 170.6 160 53.8
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.6e-40 169.5 164 54.3
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.6e-40 169.5 144 59.0
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.7e-39 166.8 172 50.6
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.7e-39 166.8 157 52.2
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.2e-39 166.4 141 56.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.2e-39 166.4 141 56.0
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.9e-39 165.2 140 56.4
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 6.4e-39 164.9 150 54.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.1e-38 164.1 182 47.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.4e-38 162.9 156 53.2
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 5.4e-38 161.8 138 55.1
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 7.0e-38 161.4 136 58.1
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.6e-37 160.2 153 52.9
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 2.7e-37 159.5 173 50.9
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.6e-37 158.7 161 52.8
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 4.6e-37 158.7 148 50.7
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 6.0e-37 158.3 146 55.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 7.8e-37 157.9 149 57.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.8e-37 157.9 146 56.8
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.0e-36 157.5 135 54.8
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.7e-36 156.8 162 53.1
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-36 156.8 152 52.0
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.3e-36 156.4 166 51.8
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 3.0e-36 156.0 162 50.0
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 3.9e-36 155.6 179 47.5
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 3.9e-36 155.6 130 56.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 5.0e-36 155.2 93 75.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 8.6e-36 154.5 146 52.7
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.5e-35 153.7 155 49.0
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.5e-35 152.9 136 55.9
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 3.3e-35 152.5 165 49.1
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 4.3e-35 152.1 160 51.2
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 5.6e-35 151.8 140 52.9
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.2e-34 150.6 170 48.2
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 2.8e-34 149.4 134 54.5
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 4.7e-34 148.7 142 50.7
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 4.7e-34 148.7 173 46.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 8.1e-34 147.9 140 55.7
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.1e-33 146.0 138 54.3
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 3.1e-33 146.0 139 51.8
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.2e-33 145.2 143 55.2
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 6.8e-33 144.8 155 49.7
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 8.9e-33 144.4 153 48.4
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.0e-32 143.3 131 54.2
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.0e-32 143.3 138 50.7
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.6e-32 142.9 136 52.9
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 5.8e-32 141.7 131 53.4
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 5.8e-32 141.7 131 53.4
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 5.8e-32 141.7 131 53.4
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 5.8e-32 141.7 157 49.7
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 7.5e-32 141.4 160 45.0
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 7.5e-32 141.4 131 53.4
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 7.5e-32 141.4 131 53.4
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 7.5e-32 141.4 165 47.9
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.8e-32 141.0 157 48.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.7e-31 140.2 164 46.3
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 2.2e-31 139.8 159 49.1
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 2.9e-31 139.4 157 49.0
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.9e-31 139.4 141 51.1
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 2.9e-31 139.4 153 47.7
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.7e-31 139.0 135 51.1
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 4.9e-31 138.7 123 54.5
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 6.4e-31 138.3 165 47.3
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.1e-30 137.5 192 42.7
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.4e-30 137.1 138 50.7
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.4e-30 137.1 140 47.9
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.4e-30 136.3 171 45.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 4.1e-30 135.6 151 46.4
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.1e-30 135.6 164 47.0
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 7.1e-30 134.8 139 50.4
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 1.2e-29 134.0 154 51.9
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.2e-29 134.0 141 51.8
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.2e-29 134.0 154 48.1
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 4.6e-29 132.1 98 66.3
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.3e-28 130.6 136 48.5
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.0e-28 129.4 119 52.1
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 5.1e-28 128.6 155 47.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 8.6e-28 127.9 101 61.4
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-27 127.5 185 41.1
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 2.5e-27 126.3 143 48.3
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.2e-26 124.0 162 46.3
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 2.1e-26 123.2 161 42.9
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 4.7e-26 122.1 141 45.4
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 6.8e-25 118.2 166 41.6
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 7.6e-24 114.8 92 55.4
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 7.6e-24 114.8 117 47.9
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.6e-24 114.8 140 40.7
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 3.8e-23 112.5 107 52.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 6.0e-21 105.1 108 54.6
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.7e-20 103.6 75 64.0
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.9e-20 102.4 146 39.0
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 5.1e-20 102.1 118 47.5
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.1e-20 102.1 118 47.5
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 5.1e-20 102.1 143 39.9
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-19 100.9 141 42.6
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.3e-19 99.0 146 41.1
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 5.6e-19 98.6 144 37.5
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.2e-18 97.4 108 42.6
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.1e-18 96.7 118 49.2
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 3.6e-18 95.9 201 33.8
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-16 90.1 165 36.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-16 90.1 116 44.0
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.8e-16 88.6 157 33.1
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.7e-15 87.0 135 38.5
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.9e-15 86.3 131 41.2
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.8e-15 85.9 134 38.8
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.2e-14 82.8 144 34.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 7.1e-14 81.6 159 35.2
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 3.0e-12 76.3 101 42.6
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.2e-08 64.3 96 38.5
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 4.5e-08 62.4 171 26.3


User provided reference genes

Program Settings