Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 6.4e-108 394.0 192 100.0
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 6.8e-102 374.0 192 93.8
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.0e-101 372.5 192 94.3
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.9e-99 365.9 192 91.7
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 3.2e-99 365.2 192 91.1
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 5.4e-99 364.4 191 92.7
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.6e-98 362.8 192 91.7
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.6e-98 362.8 190 90.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 2.1e-98 362.5 190 91.1
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 2.7e-98 362.1 190 92.1
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 3.5e-98 361.7 191 89.5
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 3.5e-98 361.7 190 90.5
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 4.6e-98 361.3 190 89.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 4.6e-98 361.3 192 90.6
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 4.6e-98 361.3 192 90.6
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.3e-97 359.8 190 90.0
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 1.3e-97 359.8 190 91.6
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.3e-97 359.0 190 90.0
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 2.3e-97 359.0 190 90.0
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.3e-97 359.0 190 91.1
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 3.0e-97 358.6 190 89.5
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 3.9e-97 358.2 191 88.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 3.9e-97 358.2 191 90.1
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 5.1e-97 357.8 190 89.5
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 5.1e-97 357.8 191 88.5
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 5.1e-97 357.8 190 90.0
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 5.1e-97 357.8 192 89.6
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 5.1e-97 357.8 192 89.6
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 6.6e-97 357.5 192 89.6
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 8.7e-97 357.1 190 90.5
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 8.7e-97 357.1 192 89.6
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.1e-96 356.7 189 88.9
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.1e-96 356.7 190 90.0
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 2.5e-96 355.5 190 88.4
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 2.5e-96 355.5 192 87.0
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 3.3e-96 355.1 191 88.0
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 3.3e-96 355.1 191 88.5
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 5.6e-96 354.4 190 88.9
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 7.3e-96 354.0 192 87.0
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 9.6e-96 353.6 190 87.9
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 9.6e-96 353.6 190 89.5
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.2e-95 353.2 191 87.4
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.2e-95 353.2 190 87.9
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.6e-95 352.8 191 88.5
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 6.2e-95 350.9 190 87.4
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 6.2e-95 350.9 192 87.5
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.2e-95 350.9 190 87.4
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.4e-94 349.7 188 87.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 1.4e-94 349.7 192 86.5
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.4e-94 349.7 190 86.8
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.8e-94 349.4 190 86.3
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.8e-94 349.4 190 86.3
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 9.0e-94 347.1 192 85.9
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 2.0e-93 345.9 190 85.8
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 3.4e-93 345.1 190 85.8
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 86.8
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 9.9e-93 343.6 190 85.3
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 84.7
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 84.7
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.2e-92 342.4 190 84.7
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.9e-92 342.0 190 85.3
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 3.8e-92 341.7 192 84.4
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.9e-92 341.3 190 85.8
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 6.4e-92 340.9 191 85.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 8.4e-92 340.5 190 84.2
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 8.4e-92 340.5 190 84.7
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 8.4e-92 340.5 192 85.4
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.1e-91 340.1 190 85.8
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 1.9e-91 339.3 216 76.9
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 2.4e-91 339.0 190 85.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 3.2e-91 338.6 190 85.3
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 84.2
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 5.4e-91 337.8 194 84.5
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-90 336.3 207 79.7
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 2.1e-90 335.9 244 72.1
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 85.3
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 85.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.0e-90 334.3 190 84.7
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.0e-89 333.6 230 73.5
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.3e-89 333.2 179 89.9
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 5.1e-89 331.3 192 82.3
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 5.1e-89 331.3 192 83.3
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 3.6e-87 325.1 177 85.3
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 6.2e-87 324.3 190 81.6
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 8.1e-87 323.9 174 89.7
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.8e-86 322.8 179 88.8
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 2.4e-86 322.4 200 77.0
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 6.9e-86 320.9 192 83.3
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 2.0e-85 319.3 164 93.3
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 2.6e-85 318.9 164 89.0
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 5.8e-85 317.8 190 81.1
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 2.2e-84 315.8 168 89.9
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 2.9e-84 315.5 196 78.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.6e-82 309.7 177 80.8
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.1e-79 299.3 169 85.8
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 3.7e-79 298.5 190 73.7
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 7.6e-77 290.8 156 88.5
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.8e-73 279.6 197 70.6
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 2.8e-71 272.3 159 84.9
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.7e-71 271.9 160 84.4
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.9e-70 267.7 158 82.9
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.8e-68 261.9 134 93.3
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.2e-67 258.5 224 63.8
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 1.2e-66 256.9 136 90.4
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 6.0e-66 254.6 194 66.5
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 6.9e-62 241.1 164 71.3
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 9.0e-62 240.7 165 67.9
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 2.6e-61 239.2 192 67.2
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 2.7e-58 229.2 135 83.7
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 6.1e-58 228.0 191 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 3.0e-57 225.7 173 60.7
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 2.5e-56 222.6 165 62.4
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.2e-53 213.8 178 56.2
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.5e-53 213.4 168 65.5
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 7.7e-53 211.1 112 87.5
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 1.4e-49 200.3 165 60.6
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 8.5e-44 181.0 119 71.4
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 2.1e-42 176.4 140 57.9
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 4.1e-38 162.2 112 64.3
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 4.1e-38 162.2 144 50.0
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 4.8e-31 138.7 132 57.6
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 6.3e-31 138.3 137 56.2
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.2e-31 137.9 169 48.5
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.9e-29 131.7 130 60.0
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 8.8e-25 117.9 126 49.2
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.8e-23 112.1 216 38.4
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-22 109.0 68 76.5
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-21 107.1 130 48.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.3e-20 103.2 120 50.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.5e-19 99.8 59 79.7
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-17 94.0 53 86.8
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 2.8e-15 86.3 57 70.2
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.3e-12 77.4 47 78.7
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 1.5e-08 63.9 39 79.5
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 2.6e-08 63.2 33 75.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.4e-08 62.4 105 40.0


User provided reference genes

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