Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 0.0e+00 1239.6 688 100.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 7.2e-202 708.0 707 57.0
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.2e-201 707.2 707 56.9
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 2.7e-201 706.1 691 54.7
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.7e-201 706.1 709 56.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.7e-195 686.8 700 55.7
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 1.1e-186 657.5 707 53.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 1.0e-184 651.0 710 52.4
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.4e-183 644.8 700 54.7
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.0e-179 632.1 591 56.2
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 7.2e-178 628.2 690 53.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 3.8e-171 605.9 698 51.6
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 3.2e-170 602.8 692 48.7
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.2e-169 600.9 688 50.9
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 8.8e-168 594.7 705 47.5
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.8e-166 589.7 720 47.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.8e-166 589.7 698 50.7
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.8e-165 587.0 697 48.5
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.2e-164 584.3 696 49.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.3e-163 580.9 713 47.1
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 1.1e-162 577.8 725 50.6
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 8.0e-161 571.6 721 45.8
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 7.5e-159 565.1 698 49.1
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 3.7e-158 562.8 709 47.5
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 4.9e-158 562.4 691 47.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.4e-157 560.8 692 48.3
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 3.1e-157 559.7 725 45.9
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 5.4e-157 558.9 771 45.4
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.7e-156 556.6 711 47.0
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.8e-156 555.1 694 47.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 3.3e-154 549.7 698 47.9
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 1.4e-152 544.3 723 45.4
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.3e-152 543.5 736 46.6
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 5.2e-152 542.3 715 45.2
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.8e-151 538.9 566 54.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.3e-150 537.7 716 43.7
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 8.3e-150 535.0 700 46.0
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.6e-148 529.3 694 47.7
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 7.3e-146 521.9 685 46.1
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 8.0e-145 518.5 721 44.8
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.2e-142 510.4 519 54.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.2e-141 506.5 698 45.1
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-140 504.2 719 43.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.1e-140 503.8 719 43.0
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 3.5e-140 503.1 691 44.0
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 6.6e-139 498.8 726 44.4
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 6.6e-139 498.8 687 44.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 8.6e-139 498.4 602 46.7
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.5e-138 496.9 692 43.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.3e-138 496.5 726 42.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.4e-136 491.1 703 41.8
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.5e-135 487.6 713 42.2
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.0e-135 487.3 719 42.4
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 5.8e-135 485.7 685 45.8
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.5e-135 485.3 678 44.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 9.9e-135 485.0 695 41.7
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 9.9e-135 485.0 711 44.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 1.3e-134 484.6 683 43.3
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.9e-134 483.4 708 43.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 3.7e-134 483.0 704 42.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 1.1e-133 481.5 705 43.1
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.7e-132 476.9 705 41.6
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.6e-132 476.1 719 40.2
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 4.6e-132 476.1 709 40.9
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.3e-131 474.6 723 45.9
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.0e-131 473.4 703 41.1
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.9e-130 470.7 690 41.7
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.3e-130 469.9 725 40.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 6.2e-129 465.7 697 41.6
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 8.1e-129 465.3 702 42.3
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.0e-128 463.0 727 40.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 5.2e-128 462.6 577 46.1
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 2.6e-127 460.3 708 41.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 2.6e-127 460.3 708 41.5
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.3e-126 458.0 692 40.6
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 5.4e-125 452.6 712 41.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.6e-124 451.1 708 42.5
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-124 450.3 475 53.7
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 4.6e-124 449.5 592 45.3
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 5.1e-123 446.0 675 42.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.5e-122 444.5 591 44.8
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 4.3e-122 443.0 648 42.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.2e-121 441.4 589 43.6
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 2.4e-120 437.2 704 41.9
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.4e-120 437.2 586 43.5
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.7e-118 431.0 671 39.3
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 2.2e-118 430.6 699 44.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 2.9e-118 430.3 590 43.6
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.6e-113 414.5 586 43.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 5.8e-111 406.0 726 37.6
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 5.8e-111 406.0 648 40.9
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 2.2e-110 404.1 715 41.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.2e-109 400.2 726 37.2
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 5.3e-104 382.9 706 38.4
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-100 371.3 640 39.8
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.8e-99 367.9 563 42.5
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.4e-96 358.2 647 36.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.3e-96 356.3 369 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 6.5e-94 349.4 651 35.9
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.1e-93 348.6 693 35.8
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-91 342.0 606 36.8
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.0e-91 342.0 484 45.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 3.0e-91 340.5 359 51.0
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.3e-90 337.0 509 45.6
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.3e-89 332.8 509 42.0
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 1.1e-88 332.0 624 35.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.7e-86 324.7 579 36.6
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 8.5e-86 322.4 657 35.3
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 2.5e-85 320.9 500 38.4
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 7.2e-85 319.3 665 34.9
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.5e-82 311.6 416 44.5
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.3e-82 310.5 670 34.3
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.3e-82 310.5 670 34.3
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 8.2e-81 305.8 455 38.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.1e-80 303.9 542 38.4
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 2.3e-75 287.7 493 36.3
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 6.7e-75 286.2 515 38.1
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.4e-72 277.7 326 45.7
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.2e-69 266.2 592 35.8
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.2e-68 265.4 358 43.6
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.7e-57 228.4 476 31.9
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.9e-53 214.9 435 35.2
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.5e-47 194.1 375 36.5
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.7e-46 191.8 334 40.4
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.0e-43 182.6 371 32.6
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.4e-43 182.2 206 46.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 7.0e-40 169.9 216 42.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 5.9e-39 166.8 262 41.2
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 6.6e-38 163.3 325 34.2
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.6e-36 157.5 374 30.2
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.4e-35 155.6 236 43.2
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.8e-35 155.2 359 35.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 9.8e-34 149.4 151 53.0
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.9e-33 147.1 332 34.0
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 1.4e-32 145.6 222 42.8
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-31 142.5 339 36.6
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 2.3e-30 138.3 402 31.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 3.6e-28 131.0 131 55.7
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 5.2e-27 127.1 234 41.0
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.8e-27 126.7 166 41.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.2e-26 125.9 194 40.7
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.7e-25 122.1 231 36.4
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 2.2e-25 121.7 325 30.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 6.4e-25 120.2 637 25.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.1e-22 110.5 151 39.1
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 1.4e-19 102.4 230 31.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.6e-18 98.2 103 52.4
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 2.4e-16 91.7 135 40.0
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 3.9e-14 84.3 120 37.5
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-14 84.3 82 51.2
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-13 82.4 80 51.2
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.3e-13 81.3 143 39.9
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.6e-12 79.0 103 43.7
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.6e-12 79.0 106 42.5
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.1e-12 78.6 87 46.0
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.6e-12 77.8 46 69.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.8e-11 75.5 150 37.3
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 3.1e-11 74.7 115 43.5
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 3.4e-10 71.2 153 37.3
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.9e-09 68.2 72 48.6
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 2.4e-08 65.1 413 24.9
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.4e-08 65.1 75 44.0
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 5.4e-08 63.9 629 22.3
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 9.3e-08 63.2 122 33.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.8e-07 60.1 87 35.6
Os08g0268900 Oryza sativa ssp. japonica HOM05D004086 ORTHO05D004641 1.7e-06 58.9 119 35.3


User provided reference genes

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