Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g09090 Coffea canephora HOM05D003053 ORTHO05D003431 8.2e-42 173.3 89 100.0
Cc07_g13070 Coffea canephora HOM05D003053 ORTHO05D003431 8.2e-42 173.3 89 100.0
Cc02_g06480 Coffea canephora HOM05D003053 ORTHO05D003431 3.6e-29 131.3 72 94.4
Dinv17997 Davidia involucrata HOM05D003053 ORTHO05D003431 6.5e-23 110.5 73 82.2
Lj1C956G3 Lonicera japonica HOM05D003053 ORTHO05D003431 3.2e-22 108.2 74 79.7
MSTRG.204 Avicennia marina HOM05D003053 ORTHO05D003431 2.1e-21 105.5 72 77.8
Dinv10620 Davidia involucrata HOM05D003053 ORTHO05D003431 2.7e-21 105.1 73 79.5
Actinidia00952 Actinidia chinensis HOM05D003053 ORTHO05D003431 1.4e-20 102.8 94 61.7
Solyc06g051520.3 Solanum lycopersicum HOM05D003053 ORTHO05D003431 1.4e-20 102.8 72 72.2
Sopen06g017490 Solanum pennellii HOM05D003053 ORTHO05D003431 1.4e-20 102.8 72 72.2
Nitab4.5_0000666g0050 Nicotiana tabacum HOM05D003053 ORTHO05D003431 5.2e-20 100.9 73 71.2
Nitab4.5_0001032g0010 Nicotiana tabacum HOM05D003053 ORTHO05D003431 5.2e-20 100.9 73 71.2
TAR633G0423 Trochodendron aralioides HOM05D003053 ORTHO05D003431 6.8e-20 100.5 73 71.2
Oeu048248.1 Olea europaea HOM05D003053 ORTHO05D003431 8.8e-20 100.1 90 64.4
SalBow6G6375 Salvia bowleyana HOM05D003053 ORTHO05D003431 8.8e-20 100.1 75 72.0
Migut.F00685 Erythranthe guttata HOM05D003053 ORTHO05D003431 1.5e-19 99.4 72 69.4
GSVIVG01032815001 Vitis vinifera HOM05D003053 ORTHO05D003431 1.5e-19 99.4 71 73.2
CSS0045343 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 2.0e-19 99.0 75 69.3
Solyc05g052580.3 Solanum lycopersicum HOM05D003053 ORTHO05D003431 3.4e-19 98.2 69 72.5
Sopen05g031110 Solanum pennellii HOM05D003053 ORTHO05D003431 3.4e-19 98.2 69 72.5
PGSC0003DMG400027123 Solanum tuberosum HOM05D003053 ORTHO05D003431 3.4e-19 98.2 69 72.5
TAR623G0105 Trochodendron aralioides HOM05D003053 ORTHO05D003431 7.5e-19 97.1 68 73.5
TAR636G3459 Trochodendron aralioides HOM05D003053 ORTHO05D003431 7.5e-19 97.1 68 73.5
Nn2g13135 Nelumbo nucifera HOM05D003053 ORTHO05D003431 9.8e-19 96.7 75 69.3
TAR636G2849 Trochodendron aralioides HOM05D003053 ORTHO05D003431 2.8e-18 95.1 87 62.1
Oeu064384.1 Olea europaea HOM05D003053 ORTHO05D003431 3.7e-18 94.7 75 68.0
Peaxi162Scf00825g00310 Petunia axillaris HOM05D003053 ORTHO05D003431 4.8e-18 94.4 73 67.1
CSS0027339 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 6.3e-18 94.0 77 64.9
Oeu005840.1 Olea europaea HOM05D003053 ORTHO05D003431 1.2e-16 89.7 82 63.4
MSTRG.27334 Avicennia marina HOM05D003053 ORTHO05D003431 2.0e-16 89.0 75 64.0
Aqoxy2G00880 Aquilegia oxysepala HOM05D003053 ORTHO05D003431 2.7e-16 88.6 76 59.2
SGA_v2.0_scaffold60G21004 Striga asiatica HOM05D003053 ORTHO05D003431 3.5e-16 88.2 76 64.5
Sc10g0002380 Simmondsia chinensis HOM05D003053 ORTHO05D003431 7.7e-16 87.0 64 64.1
PGR031G3963 Punica granatum HOM05D003053 ORTHO05D003431 2.9e-15 85.1 62 64.5
CANSAT35G1677 Cannabis sativa HOM05D003053 ORTHO05D003431 4.2e-14 81.3 77 53.2
Actinidia05365 Actinidia chinensis HOM05D003053 ORTHO05D003431 1.2e-13 79.7 72 58.3
GSVIVG01011158001 Vitis vinifera HOM05D003053 ORTHO05D003431 1.2e-13 79.7 63 61.9
Sed0024785 Sechium edule HOM05D003053 ORTHO05D003431 2.1e-13 79.0 72 56.9
RcHm_v2.0_Chr3g0463021 Rosa chinensis HOM05D003053 ORTHO05D003431 2.8e-13 78.6 88 48.9
Eucgr.B02803 Eucalyptus grandis HOM05D003053 ORTHO05D003431 4.7e-13 77.8 56 62.5
CSS0039791 Camellia sinensis var. sinensis HOM05D003053 ORTHO05D003431 1.4e-12 76.3 72 55.6
CsaV3_3G033770 Cucumis sativus L. HOM05D003053 ORTHO05D003431 2.3e-12 75.5 100 43.0
Dinv23116 Davidia involucrata HOM05D003053 ORTHO05D003431 2.3e-12 75.5 72 55.6
Hund15929 Selenicereus undatus HOM05D003053 ORTHO05D003431 3.0e-12 75.1 64 50.0
EL10Ac2g04835 Beta vulgaris HOM05D003053 ORTHO05D003431 5.2e-12 74.3 69 56.5
Nitab4.5_0004629g0010 Nicotiana tabacum HOM05D003053 ORTHO05D003431 5.2e-12 74.3 68 55.9
ClCG10G022140 Citrullus lanatus HOM05D003053 ORTHO05D003431 6.8e-12 73.9 97 44.3
Actinidia20735 Actinidia chinensis HOM05D003053 ORTHO05D003431 8.9e-12 73.6 68 57.4
Ah.16g103540 Amaranthus hybridus HOM05D003053 ORTHO05D003431 8.9e-12 73.6 69 55.1
CANSAT56G1476 Cannabis sativa HOM05D003053 ORTHO05D003431 8.9e-12 73.6 68 57.4
Nitab4.5_0013301g0010 Nicotiana tabacum HOM05D003053 ORTHO05D003431 8.9e-12 73.6 68 55.9
Rhsim09G0177400 Rhododendron simsii HOM05D003053 ORTHO05D003431 1.5e-11 72.8 70 58.6
CDE10G0448 Ceratophyllum demersum HOM05D003053 ORTHO05D003431 2.6e-11 72.0 77 46.8
HanXRQChr08g0221441 Helianthus annuus HOM05D003053 ORTHO05D003431 3.4e-11 71.6 78 60.3
ATR0681G312 Amborella trichopoda HOM05D003053 ORTHO05D003431 5.7e-11 70.9 68 51.5
Lsat_1_v5_gn_2_123481 Lactuca sativa HOM05D003053 ORTHO05D003431 5.7e-11 70.9 70 55.7
Lsat_1_v5_gn_8_11900 Lactuca sativa HOM05D003053 ORTHO05D003431 1.3e-10 69.7 78 59.0
Prupe.6G277800 Prunus persica HOM05D003053 ORTHO05D003431 1.3e-10 69.7 72 44.4
Cpa.g.sc19.171 Carica papaya HOM05D003053 ORTHO05D003431 1.7e-10 69.3 84 51.2
AUR62022887 Chenopodium quinoa HOM05D003053 ORTHO05D003431 1.7e-10 69.3 71 53.5
Gohir.A13G015100 Gossypium hirsutum HOM05D003053 ORTHO05D003431 1.7e-10 69.3 77 50.6
Sed0008999 Sechium edule HOM05D003053 ORTHO05D003431 1.7e-10 69.3 72 54.2
AUR62012254 Chenopodium quinoa HOM05D003053 ORTHO05D003431 2.2e-10 68.9 71 53.5
Peaxi162Scf00957g00332 Petunia axillaris HOM05D003053 ORTHO05D003431 2.8e-10 68.6 68 57.4
Rhsim04G0128300 Rhododendron simsii HOM05D003053 ORTHO05D003431 2.8e-10 68.6 98 42.9
unitig_0.g239 Utricularia gibba HOM05D003053 ORTHO05D003431 2.8e-10 68.6 77 46.8
CiPaw.01G298900 Carya illinoinensis HOM05D003053 ORTHO05D003431 4.9e-10 67.8 72 55.6
MD04G1153700 Malus domestica HOM05D003053 ORTHO05D003431 4.9e-10 67.8 72 47.2
Manes.07G129900 Manihot esculenta HOM05D003053 ORTHO05D003431 4.9e-10 67.8 72 51.4
ClCG07G004200 Citrullus lanatus HOM05D003053 ORTHO05D003431 6.3e-10 67.4 72 54.2
Haze_17229 Corylus avellana HOM05D003053 ORTHO05D003431 8.3e-10 67.0 72 52.8
PSO339G4648 Papaver somniferum HOM05D003053 ORTHO05D003431 8.3e-10 67.0 86 50.0
vmacro08877 Vaccinium macrocarpon HOM05D003053 ORTHO05D003431 8.3e-10 67.0 69 53.6
Gohir.D13G016300 Gossypium hirsutum HOM05D003053 ORTHO05D003431 1.4e-09 66.2 80 51.2
Gorai.013G018000 Gossypium raimondii HOM05D003053 ORTHO05D003431 1.4e-09 66.2 80 51.2
PSO384G2552 Papaver somniferum HOM05D003053 ORTHO05D003431 1.4e-09 66.2 87 48.3
TWI74G0235 Tripterygium wilfordii HOM05D003053 ORTHO05D003431 1.8e-09 65.9 66 48.5
CiPaw.09G209600 Carya illinoinensis HOM05D003053 ORTHO05D003431 2.4e-09 65.5 78 50.0
MD12G1166900 Malus domestica HOM05D003053 ORTHO05D003431 2.4e-09 65.5 68 47.1
MELO3C025196.2 Cucumis melo HOM05D003053 ORTHO05D003431 3.1e-09 65.1 72 52.8
Potri.008G068800 Populus trichocarpa HOM05D003053 ORTHO05D003431 3.1e-09 65.1 72 52.8
Duzib128G1642 Durio zibethinus HOM05D003053 ORTHO05D003431 4.1e-09 64.7 77 49.4
QL08p063235 Quercus lobata HOM05D003053 ORTHO05D003431 4.1e-09 64.7 72 51.4
vmacro10040 Vaccinium macrocarpon HOM05D003053 ORTHO05D003431 4.1e-09 64.7 78 50.0
Glyma.02G257400 Glycine max HOM05D003053 ORTHO05D003431 7.0e-09 63.9 68 57.4
Gohir.A10G236800 Gossypium hirsutum HOM05D003053 ORTHO05D003431 7.0e-09 63.9 68 51.5
MD07G1222200 Malus domestica HOM05D003053 ORTHO05D003431 7.0e-09 63.9 60 60.0
Manes.10G012000 Manihot esculenta HOM05D003053 ORTHO05D003431 7.0e-09 63.9 72 50.0
HPP92_006761 Vanilla planifolia HOM05D003053 ORTHO05D003431 7.0e-09 63.9 71 52.1
Gorai.011G288400 Gossypium raimondii HOM05D003053 ORTHO05D003431 9.2e-09 63.5 68 51.5
Prupe.2G250400 Prunus persica HOM05D003053 ORTHO05D003431 9.2e-09 63.5 62 56.5
CsaV3_5G010150 Cucumis sativus L. HOM05D003053 ORTHO05D003431 1.2e-08 63.2 72 51.4
ECA238G4437 Erigeron canadensis HOM05D003053 ORTHO05D003431 1.2e-08 63.2 66 51.5
HanXRQChr14g0459711 Helianthus annuus HOM05D003053 ORTHO05D003431 1.2e-08 63.2 74 52.7
Sed0014328 Sechium edule HOM05D003053 ORTHO05D003431 1.2e-08 63.2 72 47.2
Sed0024436 Sechium edule HOM05D003053 ORTHO05D003431 1.2e-08 63.2 77 51.9
Hma1.2p1_0703F.1_g206370 Hydrangea macrophylla HOM05D003053 ORTHO05D003431 1.6e-08 62.8 83 50.6
FvH4_6g11400 Fragaria vesca HOM05D003053 ORTHO05D003431 2.7e-08 62.0 73 49.3
FAN14G4791 Fragaria x ananassa HOM05D003053 ORTHO05D003431 2.7e-08 62.0 73 49.3
MD01G1153200 Malus domestica HOM05D003053 ORTHO05D003431 2.7e-08 62.0 60 56.7
THA.LOC104810642 Tarenaya hassleriana HOM05D003053 ORTHO05D003431 2.7e-08 62.0 78 48.7
FAN14G2670 Fragaria x ananassa HOM05D003053 ORTHO05D003431 3.5e-08 61.6 73 49.3
RcHm_v2.0_Chr1g0370291 Rosa chinensis HOM05D003053 ORTHO05D003431 3.5e-08 61.6 61 55.7
Thecc.10G015800 Theobroma cacao HOM05D003053 ORTHO05D003431 3.5e-08 61.6 80 46.2
COL.COLO4_25730 Corchorus olitorius HOM05D003053 ORTHO05D003431 4.5e-08 61.2 77 48.1
Sabra10G0145200 Salix brachista HOM05D003053 ORTHO05D003431 4.5e-08 61.2 72 47.2
Aa31LG10G10890 Aethionema arabicum HOM05D003053 ORTHO05D003431 5.9e-08 60.8 72 47.2
FAN09G4810 Fragaria x ananassa HOM05D003053 ORTHO05D003431 5.9e-08 60.8 89 42.7
PGR142G3167 Punica granatum HOM05D003053 ORTHO05D003431 5.9e-08 60.8 73 50.7
Sabra06G0077600 Salix brachista HOM05D003053 ORTHO05D003431 7.8e-08 60.5 73 43.8
FAN05G3995 Fragaria x ananassa HOM05D003053 ORTHO05D003431 1.0e-07 60.1 89 42.7
Ciclev10031856m.g Citrus clementina HOM05D003053 ORTHO05D003431 1.3e-07 59.7 76 48.7
FAN02G3721 Fragaria x ananassa HOM05D003053 ORTHO05D003431 1.3e-07 59.7 89 42.7
Gohir.D10G248600 Gossypium hirsutum HOM05D003053 ORTHO05D003431 1.3e-07 59.7 70 51.4
THA.LOC104810101 Tarenaya hassleriana HOM05D003053 ORTHO05D003431 1.3e-07 59.7 71 45.1
CARHR166040 Cardamine hirsuta HOM05D003053 ORTHO05D003431 1.7e-07 59.3 68 48.5
Thhalv10006119m.g Eutrema salsugineum HOM05D003053 ORTHO05D003431 1.7e-07 59.3 68 48.5
Phvul.008G223800 Phaseolus vulgaris HOM05D003053 ORTHO05D003431 2.3e-07 58.9 76 52.6
Potri.010G188500 Populus trichocarpa HOM05D003053 ORTHO05D003431 2.3e-07 58.9 72 48.6
VMungo0647G2393 Vigna mungo HOM05D003053 ORTHO05D003431 2.3e-07 58.9 76 52.6
AL5G37240 Arabidopsis lyrata HOM05D003053 ORTHO05D003431 2.9e-07 58.5 68 48.5
AT3G55960 Arabidopsis thaliana HOM05D003053 ORTHO05D003431 2.9e-07 58.5 68 48.5
Haze_21007 Corylus avellana HOM05D003053 ORTHO05D003431 2.9e-07 58.5 74 47.3
Sp5g06570 Schrenkiella parvula HOM05D003053 ORTHO05D003431 3.9e-07 58.2 68 47.1
C08p31270 Brassica napus HOM05D003053 ORTHO05D003431 5.0e-07 57.8 68 47.1
Ciclev10012210m.g Citrus clementina HOM05D003053 ORTHO05D003431 5.0e-07 57.8 80 45.0
Glyma.14G059000 Glycine max HOM05D003053 ORTHO05D003431 5.0e-07 57.8 62 58.1
LjContig00357g0025174 Lotus japonicus HOM05D003053 ORTHO05D003431 5.0e-07 57.8 62 58.1
Carub.0005s2270 Capsella rubella HOM05D003053 ORTHO05D003431 6.6e-07 57.4 68 47.1
CiPaw.02G192600 Carya illinoinensis HOM05D003053 ORTHO05D003431 6.6e-07 57.4 65 52.3
Atru.chr12.39 Acer truncatum HOM05D003053 ORTHO05D003431 8.6e-07 57.0 73 52.1
BcaC07g39913 Brassica carinata HOM05D003053 ORTHO05D003431 1.1e-06 56.6 68 45.6
A09p48910 Brassica napus HOM05D003053 ORTHO05D003431 1.1e-06 56.6 68 45.6
BraA09t40346Z Brassica rapa HOM05D003053 ORTHO05D003431 1.1e-06 56.6 68 45.6
Cfa017201 Carpinus fangiana HOM05D003053 ORTHO05D003431 1.1e-06 56.6 74 47.3
FvH4_7g24520 Fragaria vesca HOM05D003053 ORTHO05D003431 1.1e-06 56.6 64 53.1
FAN01G2696 Fragaria x ananassa HOM05D003053 ORTHO05D003431 1.1e-06 56.6 64 53.1
Sabra08G0050500 Salix brachista HOM05D003053 ORTHO05D003431 1.1e-06 56.6 72 44.4
FAN10G2867 Fragaria x ananassa HOM05D003053 ORTHO05D003431 1.5e-06 56.2 64 53.1
FAN06G3299 Fragaria x ananassa HOM05D003053 ORTHO05D003431 2.5e-06 55.5 64 51.6
arahy.Tifrunner.gnm1.ann1.PEV2PF Arachis hypogaea HOM05D003053 ORTHO05D003431 3.3e-06 55.1 78 52.6
BolC8t50748H Brassica oleracea HOM05D003053 ORTHO05D003431 4.3e-06 54.7 68 45.6
BcaC08g44757 Brassica carinata HOM05D003053 ORTHO05D003431 5.6e-06 54.3 68 44.1
C06p23220 Brassica napus HOM05D003053 ORTHO05D003431 5.6e-06 54.3 68 44.1
BolC6t37495H Brassica oleracea HOM05D003053 ORTHO05D003431 5.6e-06 54.3 68 44.1
arahy.Tifrunner.gnm1.ann1.EVJ1Y4 Arachis hypogaea HOM05D003053 ORTHO05D003431 9.5e-06 53.5 78 51.3
A07p22710 Brassica napus HOM05D003053 ORTHO05D003431 9.5e-06 53.5 68 42.6
BraA07t29939Z Brassica rapa HOM05D003053 ORTHO05D003431 9.5e-06 53.5 68 42.6
Ca_05963_v3 Cicer arietinum L. HOM05D003053 ORTHO05D003431 9.5e-06 53.5 38 63.2
Thhalv10016941m.g Eutrema salsugineum HOM05D003053 ORTHO05D003431 9.5e-06 53.5 71 40.8
Potri.006G100800 Populus trichocarpa HOM05D003053 ORTHO05D003431 9.5e-06 53.5 69 43.5


User provided reference genes

Program Settings