Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 4.3e-164 581.3 291 100.0
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 8.5e-104 380.9 274 73.7
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 1.9e-103 379.8 277 70.0
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 9.4e-103 377.5 284 72.5
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.1e-102 376.3 292 69.9
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 6.1e-102 374.8 297 69.4
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 1.4e-101 373.6 249 75.1
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 2.3e-101 372.9 285 67.7
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 3.9e-101 372.1 249 74.7
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 5.1e-101 371.7 276 70.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 5.1e-101 371.7 291 69.4
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 6.7e-101 371.3 222 82.9
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 8.8e-101 370.9 217 84.8
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.5e-100 370.2 257 73.2
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.5e-100 370.2 220 84.5
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 4.4e-100 368.6 212 85.4
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 1.7e-99 366.7 217 83.9
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.2e-99 366.3 290 69.0
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 2.8e-99 365.9 213 85.0
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.8e-99 365.9 220 82.3
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 3.1e-98 362.5 254 72.0
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 7.0e-98 361.3 269 69.1
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 7.0e-98 361.3 222 81.1
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 1.3e-96 357.1 280 69.3
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.2e-96 356.3 273 68.9
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.2e-96 356.3 283 69.6
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 3.8e-96 355.5 217 81.1
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.8e-96 355.5 217 81.1
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.4e-95 353.6 278 68.7
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.9e-95 353.2 279 66.7
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.2e-95 352.4 217 80.6
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 3.2e-95 352.4 201 85.1
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.2e-95 352.4 221 78.3
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 3.2e-95 352.4 225 79.1
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 7.2e-95 351.3 224 78.6
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 9.4e-95 350.9 223 78.9
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 9.4e-95 350.9 224 78.1
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-94 350.1 217 80.2
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.7e-94 349.4 309 62.5
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 2.7e-94 349.4 287 67.9
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 2.7e-94 349.4 271 67.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.6e-94 349.0 221 78.7
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 4.7e-94 348.6 289 66.8
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 8.0e-94 347.8 201 84.6
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 2.3e-93 346.3 214 79.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 2.3e-93 346.3 237 73.8
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 3.0e-93 345.9 219 78.5
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 5.2e-93 345.1 225 75.6
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 5.2e-93 345.1 201 81.6
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.7e-93 344.7 295 64.7
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.7e-93 344.7 295 64.7
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 8.8e-93 344.4 221 77.4
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.1e-92 344.0 284 66.9
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.1e-92 344.0 222 76.1
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.5e-92 343.6 220 78.2
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.5e-92 343.6 287 67.6
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 2.0e-92 343.2 273 66.3
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 3.3e-92 342.4 285 64.9
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 3.3e-92 342.4 275 66.5
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.4e-92 342.0 222 76.6
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 4.4e-92 342.0 244 71.7
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 5.7e-92 341.7 212 78.3
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 5.7e-92 341.7 216 79.2
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 9.7e-92 340.9 275 65.5
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 9.7e-92 340.9 236 72.0
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.3e-91 340.5 240 71.7
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 3.7e-91 339.0 230 74.3
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 3.7e-91 339.0 230 74.3
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 6.3e-91 338.2 216 78.2
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 8.2e-91 337.8 244 70.1
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 8.2e-91 337.8 199 82.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 8.2e-91 337.8 279 64.9
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.4e-90 337.0 212 81.1
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.8e-90 336.7 230 73.9
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.4e-90 336.3 230 73.9
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.1e-90 335.9 207 80.7
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.0e-89 333.2 229 73.8
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 2.6e-89 332.8 279 64.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 2.2e-88 329.7 278 65.1
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 8.5e-88 327.8 196 79.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.1e-87 327.4 255 66.7
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.5e-87 327.0 312 61.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 4.2e-87 325.5 183 84.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.2e-87 325.5 217 77.4
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 5.5e-87 325.1 183 83.6
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 8.0e-86 321.2 218 75.7
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.3e-83 313.9 250 68.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 5.3e-82 308.5 173 86.7
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 3.5e-81 305.8 198 75.8
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 3.5e-81 305.8 168 88.7
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.9e-79 300.1 211 72.0
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 4.2e-79 298.9 250 62.8
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 4.2e-79 298.9 247 66.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 4.7e-78 295.4 189 76.2
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.2e-76 290.8 314 53.8
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 8.3e-75 284.6 230 70.0
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 4.1e-74 282.3 254 62.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.6e-73 280.4 237 59.1
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 3.5e-73 279.3 204 69.6
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 6.6e-72 275.0 207 67.1
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 4.2e-71 272.3 193 68.4
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 9.5e-71 271.2 222 64.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 2.1e-70 270.0 192 64.6
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.2e-69 265.4 163 82.2
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 6.8e-61 238.4 225 59.1
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 5.4e-58 228.8 237 54.9
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.3e-53 213.4 121 84.3
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 6.0e-49 198.7 110 86.4
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 6.2e-46 188.7 213 47.4
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 8.1e-46 188.3 237 49.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 4.0e-45 186.0 210 44.8
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 6.8e-45 185.3 168 64.3
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 8.3e-43 178.3 205 48.8
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.2e-42 176.4 119 76.5
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.5e-39 167.5 97 82.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 9.6e-39 164.9 97 81.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.7e-35 154.1 113 69.9
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 4.2e-34 149.4 291 37.8
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 5.1e-32 142.5 78 87.2
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 6.6e-32 142.1 201 44.8
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 6.6e-32 142.1 80 83.8
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.6e-30 137.5 78 87.2
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.4e-28 129.4 78 80.8
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 2.9e-19 100.1 57 84.2
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.9e-19 100.1 136 50.0
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.7e-17 93.6 62 74.2
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 1.3e-16 91.3 65 66.2
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 5.6e-15 85.9 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 7.4e-15 85.5 51 78.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 2.1e-14 84.0 48 81.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.2e-12 78.2 55 69.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 8.4e-11 72.0 47 70.2
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.8e-08 64.3 47 66.0
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 5.7e-07 59.3 117 37.6


User provided reference genes

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