Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 1.8e-44 182.2 91 100.0
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 6.7e-39 163.7 89 88.8
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 1.9e-38 162.2 88 88.6
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 1.3e-37 159.5 88 86.4
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 1.6e-37 159.1 88 88.6
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 6.2e-37 157.1 88 84.1
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.4e-36 156.0 88 85.2
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 2.4e-36 155.2 88 85.2
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 2.4e-36 155.2 88 86.4
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 2.4e-36 155.2 88 86.4
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 3.1e-36 154.8 89 85.4
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 3.1e-36 154.8 89 82.0
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 3.1e-36 154.8 88 84.1
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 3.1e-36 154.8 88 83.0
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 4.0e-36 154.5 88 84.1
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 4.0e-36 154.5 88 84.1
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 4.0e-36 154.5 88 83.0
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 4.0e-36 154.5 88 83.0
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 5.3e-36 154.1 88 84.1
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 6.9e-36 153.7 89 84.3
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 9.0e-36 153.3 85 87.1
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 9.0e-36 153.3 85 88.2
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 1.2e-35 152.9 86 87.2
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 1.5e-35 152.5 89 83.1
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 1.5e-35 152.5 88 84.1
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 2.0e-35 152.1 88 84.1
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 2.6e-35 151.8 88 84.1
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 3.4e-35 151.4 88 84.1
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 3.4e-35 151.4 88 83.0
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 3.4e-35 151.4 87 81.6
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 4.5e-35 151.0 88 84.1
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 5.8e-35 150.6 88 84.1
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 5.8e-35 150.6 85 85.9
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 5.8e-35 150.6 88 80.7
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 7.6e-35 150.2 88 83.0
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 7.6e-35 150.2 89 80.9
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 7.6e-35 150.2 88 80.7
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 9.9e-35 149.8 88 81.8
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 9.9e-35 149.8 88 81.8
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 1.3e-34 149.4 89 80.9
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 1.3e-34 149.4 85 83.5
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 1.3e-34 149.4 89 79.8
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 1.7e-34 149.1 81 86.4
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 2.2e-34 148.7 83 88.0
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 2.2e-34 148.7 88 81.8
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 2.2e-34 148.7 88 81.8
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 80.7
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 79.5
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 79.5
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.9e-34 148.3 88 79.5
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 3.8e-34 147.9 86 82.6
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 3.8e-34 147.9 84 85.7
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 4.9e-34 147.5 89 77.5
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 6.4e-34 147.1 86 82.6
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 6.4e-34 147.1 88 81.8
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 1.1e-33 146.4 86 82.6
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 2.4e-33 145.2 88 80.7
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 2.4e-33 145.2 85 83.5
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 2.4e-33 145.2 88 80.7
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 2.4e-33 145.2 86 81.4
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 9.3e-33 143.3 86 80.2
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 9.3e-33 143.3 86 81.4
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 2.1e-32 142.1 86 81.4
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 2.1e-32 142.1 86 81.4
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 2.7e-32 141.7 88 78.4
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 3.5e-32 141.4 88 76.1
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 79.1
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 79.1
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 79.1
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 79.1
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 79.1
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 6.0e-32 140.6 86 80.2
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 1.0e-31 139.8 86 79.1
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.0e-31 139.8 99 70.7
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 1.3e-31 139.4 86 79.1
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 1.3e-31 139.4 88 76.1
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 1.3e-31 139.4 88 73.9
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 1.8e-31 139.0 88 77.3
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 5.1e-31 137.5 86 77.9
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 6.7e-31 137.1 126 58.7
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 6.7e-31 137.1 88 75.0
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 1.9e-30 135.6 86 76.7
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 4.3e-30 134.4 100 67.0
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 3.7e-29 131.3 69 91.3
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 4.0e-28 127.9 72 81.9
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 4.5e-27 124.4 67 91.0
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 7.6e-27 123.6 71 83.1
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 1.7e-26 122.5 72 80.6
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 2.2e-26 122.1 72 80.6
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 2.2e-26 122.1 72 80.6
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 2.2e-26 122.1 68 86.8
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.4e-25 119.4 70 80.0
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 2.5e-25 118.6 136 52.2
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 4.2e-25 117.9 67 82.1
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 5.5e-25 117.5 70 78.6
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 9.3e-25 116.7 66 86.4
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 7.9e-24 113.6 65 81.5
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 1.1e-22 109.8 79 63.3
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 1.5e-22 109.4 65 76.9
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 1.5e-22 109.4 65 76.9
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 1.9e-22 109.0 65 80.0
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 2.2e-21 105.5 65 75.4
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 1.1e-20 103.2 81 61.7
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 1.4e-20 102.8 65 73.8
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 6.9e-20 100.5 74 64.9
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 6.1e-16 87.4 65 63.1
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 1.4e-15 86.3 67 65.7
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 1.1e-14 83.2 45 80.0
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 4.8e-13 77.8 88 53.4
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 2.6e-11 72.0 73 50.7
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 8.5e-10 67.0 68 47.1


User provided reference genes

Program Settings