Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 6.5e-134 480.7 241 100.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.1e-76 289.7 237 63.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.5e-74 283.5 244 60.2
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 6.4e-73 278.1 236 61.4
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.2e-72 275.8 236 62.3
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.6e-71 273.5 206 67.5
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.7e-71 272.7 214 65.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 7.8e-71 271.2 225 64.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 5.1e-70 268.5 222 63.1
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 2.5e-69 266.2 244 59.0
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.3e-69 265.8 244 59.8
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 3.6e-68 262.3 236 59.7
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.2e-68 261.5 222 61.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.8e-67 260.0 208 65.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.4e-67 259.6 214 67.8
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.1e-67 259.2 236 58.5
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 3.1e-67 259.2 225 62.2
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.0e-67 258.8 208 64.4
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.3e-67 258.5 214 63.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.4e-66 255.8 195 66.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 3.4e-66 255.8 195 66.7
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 3.4e-66 255.8 247 56.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 3.4e-66 255.8 241 59.3
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.8e-66 255.0 195 66.7
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.3e-65 253.8 246 54.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.9e-65 252.7 211 64.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.9e-65 251.9 244 58.6
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 6.4e-65 251.5 213 62.0
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 6.4e-65 251.5 177 71.2
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-64 250.8 235 58.3
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-64 250.8 240 57.1
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-64 250.4 215 61.4
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-64 249.6 214 59.3
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 4.2e-64 248.8 244 55.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 4.2e-64 248.8 244 55.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.2e-64 248.8 207 60.9
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.2e-64 248.8 215 60.9
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.2e-64 248.8 238 57.6
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.4e-64 248.4 151 79.5
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.6e-63 246.9 248 53.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-63 246.9 236 56.4
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-63 246.5 236 56.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.1e-63 246.5 205 62.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 2.7e-63 246.1 215 60.0
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.5e-63 245.7 214 58.9
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.0e-62 244.2 247 53.0
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-62 243.8 200 63.0
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.7e-62 243.4 206 61.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.7e-62 243.4 183 67.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.3e-62 243.0 207 62.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 3.0e-62 242.7 217 59.4
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.1e-62 241.9 215 60.9
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.1e-62 241.9 238 56.7
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 220 59.1
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 187 67.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 180 68.3
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.5e-61 240.4 185 65.9
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.9e-61 240.0 212 60.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.5e-61 239.6 207 58.9
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.3e-61 239.2 249 55.4
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.3e-61 239.2 247 53.0
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-61 238.8 166 69.9
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 5.6e-61 238.4 215 58.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 7.4e-61 238.0 215 58.1
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 7.4e-61 238.0 216 58.3
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 7.4e-61 238.0 247 52.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 7.4e-61 238.0 236 55.5
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.6e-61 237.7 213 59.2
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.6e-61 237.7 213 59.2
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.6e-61 237.7 144 79.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 9.6e-61 237.7 201 61.2
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.6e-61 237.7 240 57.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 9.6e-61 237.7 239 54.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.3e-60 237.3 215 58.1
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.3e-60 237.3 154 76.6
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.1e-60 236.5 212 60.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.8e-60 236.1 195 63.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.6e-60 235.7 208 57.2
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 6.2e-60 235.0 245 52.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 8.1e-60 234.6 244 52.5
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.1e-60 234.6 149 74.5
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.1e-59 234.2 219 58.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.1e-59 234.2 154 72.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.8e-59 233.4 154 72.7
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.8e-59 233.4 161 70.2
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.4e-59 233.0 152 73.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 3.1e-59 232.6 182 65.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 5.3e-59 231.9 209 59.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 6.9e-59 231.5 136 82.4
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 6.9e-59 231.5 209 57.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.0e-59 231.1 243 51.9
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 3.4e-58 229.2 246 54.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.5e-58 228.8 150 74.7
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 5.8e-58 228.4 146 77.4
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 7.6e-58 228.0 254 51.2
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 9.9e-58 227.6 149 74.5
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.3e-57 227.3 244 50.8
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.3e-57 227.3 167 69.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.9e-57 226.1 246 51.6
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.9e-57 225.3 248 50.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.9e-57 225.3 244 49.2
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.4e-57 224.9 203 59.1
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 8.4e-57 224.6 186 60.2
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.1e-56 224.2 187 61.0
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.1e-56 224.2 145 73.1
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.4e-56 223.0 143 73.4
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.2e-56 222.6 180 62.8
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.2e-56 222.2 157 67.5
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 7.1e-56 221.5 208 54.3
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 9.3e-56 221.1 222 55.9
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.6e-55 220.3 182 60.4
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-55 220.3 158 69.0
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.1e-55 219.9 236 52.1
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.7e-55 219.5 182 61.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.3e-54 217.2 237 50.6
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.3e-52 210.7 208 53.8
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 3.7e-52 209.1 234 49.6
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-51 207.6 152 66.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-51 207.2 210 53.3
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 4.5e-50 202.2 148 64.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.9e-49 199.5 128 74.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.1e-47 193.4 146 67.1
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.9e-45 186.8 171 56.1
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.3e-45 186.0 227 48.0
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 7.4e-45 184.9 162 59.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.6e-44 183.7 142 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.8e-43 180.3 142 59.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 6.9e-43 178.3 198 51.0
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 9.0e-43 177.9 169 60.4
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.7e-41 173.7 180 47.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.7e-41 173.7 139 54.7
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.8e-41 172.6 244 43.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 4.6e-39 165.6 111 75.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 3.9e-38 162.5 200 49.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 6.7e-38 161.8 134 61.9
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.1e-37 161.0 141 60.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 3.4e-34 149.4 144 58.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-32 143.7 209 41.6
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.1e-31 140.2 182 43.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.5e-29 134.0 121 56.2
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.2e-28 130.2 144 50.7
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.7e-28 129.4 139 50.4
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-22 111.3 151 45.7
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.5e-21 107.5 145 39.3
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.4e-21 105.9 174 43.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.7e-20 102.8 214 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 8.2e-20 101.7 79 60.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.5e-17 92.0 129 38.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 8.0e-15 85.1 135 38.5
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.8e-11 73.9 150 30.0
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.4e-11 73.6 124 33.1
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.1e-11 72.8 163 31.3
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 5.0e-09 65.9 114 30.7
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 6.5e-09 65.5 83 45.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-06 58.2 88 42.0


User provided reference genes

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