Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.8e-120 436.0 230 100.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 4.5e-68 261.9 239 64.9
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.6e-63 246.1 237 63.3
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 8.3e-62 241.1 236 62.3
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 8.3e-62 241.1 237 62.4
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.3e-54 217.2 227 61.7
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.9e-54 215.3 226 61.9
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.3e-51 207.2 239 56.5
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.3e-51 207.2 204 64.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 5.0e-51 205.3 235 59.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 5.0e-51 205.3 235 59.1
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 1.4e-48 197.2 234 59.0
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.3e-48 196.4 234 58.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.0e-47 193.4 237 57.0
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 4.9e-46 188.7 179 63.1
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.1e-45 187.6 237 54.9
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.4e-45 186.4 234 56.4
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 6.0e-44 181.8 237 54.0
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.8e-44 181.4 180 62.2
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 2.3e-43 179.9 225 54.7
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 3.3e-42 176.0 239 54.4
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.3e-42 174.9 233 53.6
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 9.5e-42 174.5 240 52.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.2e-41 174.1 225 52.4
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.2e-41 174.1 240 51.7
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 3.6e-41 172.6 223 52.5
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 6.2e-41 171.8 264 48.9
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.1e-40 171.0 239 51.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.3e-40 169.9 233 53.2
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.1e-40 169.5 258 49.2
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 4.0e-40 169.1 237 52.7
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 5.2e-40 168.7 218 54.6
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 5.2e-40 168.7 237 50.6
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 6.8e-40 168.3 245 49.8
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.5e-39 167.2 222 51.4
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 3.4e-39 166.0 227 50.7
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 4.4e-39 165.6 237 51.5
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 9.9e-39 164.5 240 52.5
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 3.7e-38 162.5 217 55.3
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 1.2e-36 157.5 231 46.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.6e-36 157.1 231 48.1
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 3.5e-36 156.0 225 49.8
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.0e-35 154.5 238 48.7
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.3e-35 154.1 235 50.6
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.9e-35 152.5 222 46.4
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.1e-34 151.0 225 48.4
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.1e-34 151.0 182 57.1
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.3e-34 148.3 231 47.6
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.2e-33 147.5 234 48.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.8e-33 146.4 214 50.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 3.6e-33 146.0 214 50.5
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.1e-33 144.8 192 52.6
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-32 143.7 219 49.8
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.0e-31 140.2 236 47.9
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 2.6e-31 139.8 183 51.9
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 9.9e-31 137.9 244 46.3
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-30 137.5 222 47.7
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.3e-30 137.5 237 45.1
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.8e-30 136.0 209 49.3
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.9e-30 135.6 234 44.4
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.9e-30 135.6 202 49.0
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 4.9e-30 135.6 232 45.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.9e-29 133.7 215 46.0
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 2.4e-29 133.3 198 52.0
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.0e-27 127.9 116 65.5
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-27 127.1 238 43.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.7e-27 127.1 189 48.7
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.0e-27 126.3 238 46.2
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 5.1e-27 125.6 235 46.4
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 8.7e-27 124.8 236 44.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.5e-26 124.0 166 53.0
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.9e-26 123.6 230 44.8
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.3e-26 122.5 242 45.5
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.3e-26 122.5 242 45.5
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 9.6e-26 121.3 242 43.4
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 9.6e-26 121.3 193 47.2
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 9.6e-26 121.3 243 44.0
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-25 120.9 246 40.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 3.6e-25 119.4 206 47.1
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.8e-25 119.0 242 39.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 6.2e-25 118.6 248 40.7
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 6.2e-25 118.6 248 40.7
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 6.2e-25 118.6 210 47.6
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.1e-24 117.9 192 48.4
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.1e-24 117.9 192 46.4
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 3.1e-24 116.3 248 40.3
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.1e-24 116.3 243 42.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 5.3e-24 115.5 234 41.5
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 5.3e-24 115.5 226 38.5
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 5.3e-24 115.5 244 42.2
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.9e-24 115.2 198 45.5
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 1.2e-23 114.4 252 39.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 2.0e-23 113.6 245 38.8
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.4e-23 112.5 218 44.5
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 7.6e-23 111.7 131 58.0
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 9.9e-23 111.3 227 37.9
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-22 110.9 218 44.0
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.7e-22 110.5 253 35.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.7e-22 110.5 237 40.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 6.4e-22 108.6 239 43.9
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 6.4e-22 108.6 247 42.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.1e-21 107.8 272 36.8
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.9e-21 107.1 265 37.7
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.4e-21 106.7 256 38.3
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 7.1e-21 105.1 253 38.3
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.3e-21 104.8 181 45.9
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-20 104.4 181 46.4
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.1e-20 103.6 181 45.3
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.7e-20 103.2 219 41.1
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 6.0e-20 102.1 123 53.7
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.6e-19 98.6 269 37.9
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 8.7e-19 98.2 226 38.5
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.1e-18 97.8 187 41.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 1.1e-18 97.8 195 41.0
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-18 97.1 227 38.8
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 5.6e-18 95.5 238 36.1
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 5.6e-18 95.5 205 41.0
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 7.3e-18 95.1 246 36.6
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 9.6e-18 94.7 236 36.9
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.3e-17 94.4 209 40.2
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.1e-17 93.6 271 34.7
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 2.8e-17 93.2 181 41.4
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 1.1e-16 91.3 94 57.4
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-16 90.9 283 36.7
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.8e-16 90.5 151 47.7
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.8e-16 90.5 151 47.7
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.0e-16 89.4 167 41.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 4.0e-16 89.4 253 36.4
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 5.3e-16 89.0 231 34.2
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 6.9e-16 88.6 195 39.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.0e-16 88.2 300 33.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.5e-15 87.4 176 40.3
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.5e-15 87.4 199 40.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 2.0e-15 87.0 230 36.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.4e-15 86.3 179 41.9
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.9e-15 84.7 304 33.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.7e-14 84.0 168 43.5
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.8e-14 82.8 226 35.8
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.1e-13 81.3 93 59.1
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.2e-13 79.3 128 50.0
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 7.1e-13 78.6 281 30.6
CAN.G1425.14 Capsicum annuum HOM05D004795 ORTHO05D005518 6.0e-12 75.5 67 64.2
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 6.0e-12 75.5 337 30.6
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-11 73.9 210 32.9
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.5e-10 70.9 174 36.2
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.9e-10 70.5 136 44.1
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.3e-10 69.7 162 37.7
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 2.8e-09 66.6 173 34.1
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.7e-09 66.2 82 57.3
SalBow3G3444 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.1e-08 64.7 65 58.5
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.8e-08 63.9 82 51.2
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 6.9e-08 62.0 199 32.2


User provided reference genes

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