Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 4.5e-267 924.5 639 100.0
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 1.2e-105 388.3 626 52.4
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.4e-98 364.0 623 47.2
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 2.4e-95 354.0 620 51.1
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 6.6e-93 345.9 637 55.1
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 8.7e-93 345.5 630 41.3
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.6e-91 341.3 634 43.2
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.1e-91 340.9 608 44.4
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 2.8e-91 340.5 627 40.5
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 1.3e-88 331.6 640 40.3
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 2.9e-88 330.5 637 41.0
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.2e-86 325.1 629 38.6
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 3.5e-86 323.6 621 44.3
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 4.6e-86 323.2 625 54.6
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 2.3e-85 320.9 635 48.2
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 5.6e-84 316.2 515 51.3
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.3e-83 315.1 585 41.2
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.6e-83 314.7 622 37.6
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 1.8e-82 311.2 635 38.7
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 3.1e-82 310.5 634 43.1
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 3.1e-82 310.5 644 46.1
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 5.3e-82 309.7 638 48.1
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 6.9e-82 309.3 638 40.0
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 2.0e-81 307.8 618 45.3
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 3.4e-81 307.0 625 39.4
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 4.5e-81 306.6 629 49.3
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 9.9e-81 305.4 645 46.7
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 2.9e-80 303.9 625 39.2
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 1.4e-79 301.6 596 47.1
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.9e-79 301.2 621 40.6
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 7.1e-79 299.3 623 36.9
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 7.1e-79 299.3 623 37.2
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 7.1e-79 299.3 597 45.2
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 2.7e-78 297.4 625 37.1
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.5e-78 297.0 623 39.5
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 5.1e-77 293.1 623 41.7
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 5.1e-77 293.1 623 41.7
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 1.9e-76 291.2 563 46.7
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 3.3e-76 290.4 645 52.4
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 2.1e-75 287.7 623 47.0
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 4.0e-74 283.5 643 50.9
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 4.0e-74 283.5 634 41.8
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 2.6e-73 280.8 644 35.9
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 2.6e-73 280.8 634 36.9
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 2.9e-72 277.3 632 42.1
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 3.8e-72 276.9 625 35.8
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 8.4e-72 275.8 617 40.4
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 1.4e-71 275.0 590 49.0
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 1.4e-71 275.0 620 48.9
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 3.2e-71 273.9 626 47.6
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 3.2e-71 273.9 599 36.9
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 2.7e-70 270.8 632 44.9
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.0e-69 268.9 657 40.6
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.8e-69 268.1 625 46.9
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.3e-69 267.7 634 45.3
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 3.0e-69 267.3 634 45.3
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.0e-69 267.3 634 45.1
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 3.9e-69 266.9 625 46.4
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 1.1e-68 265.4 639 44.4
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.5e-68 265.0 625 47.0
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.3e-68 263.8 649 44.4
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 1.6e-67 261.5 636 35.1
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.4e-66 257.7 476 41.8
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 5.3e-66 256.5 637 37.8
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 6.9e-66 256.1 598 35.5
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 2.0e-65 254.6 620 34.5
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 6.5e-64 249.6 603 37.3
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 4.2e-63 246.9 530 52.5
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 2.7e-62 244.2 596 49.8
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 3.0e-61 240.7 642 39.7
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 7.4e-60 236.1 470 45.3
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 2.8e-59 234.2 616 35.1
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 5.3e-58 229.9 325 47.4
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 4.5e-57 226.9 623 44.0
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 1.7e-56 224.9 618 45.5
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.7e-56 224.9 623 38.0
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 2.9e-56 224.2 620 48.1
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 1.9e-55 221.5 578 46.0
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 2.1e-54 218.0 594 36.5
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 3.6e-54 217.2 595 36.6
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 1.4e-53 215.3 625 32.2
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.8e-53 214.9 623 36.0
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 8.8e-53 212.6 625 36.8
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 8.8e-53 212.6 568 34.0
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.1e-52 212.2 618 35.3
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 2.6e-52 211.1 567 31.9
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 8.2e-51 206.1 577 38.6
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 1.1e-50 205.7 619 45.7
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 5.3e-50 203.4 623 37.1
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 1.2e-49 202.2 352 58.8
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 2.0e-49 201.4 591 38.9
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 4.5e-49 200.3 625 30.1
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 2.2e-48 198.0 626 35.6
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 2.5e-47 194.5 626 33.9
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 4.7e-46 190.3 559 30.8
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.4e-45 188.7 617 31.3
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 1.8e-45 188.3 625 34.2
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 1.5e-44 185.3 622 35.2
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 4.4e-44 183.7 622 31.8
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 2.8e-43 181.0 622 36.3
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 2.8e-43 181.0 586 30.5
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 2.4e-42 177.9 615 29.6
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 5.3e-42 176.8 643 28.9
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 7.0e-42 176.4 298 40.6
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 2.6e-41 174.5 617 32.6
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 5.9e-41 173.3 627 30.6
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 7.2e-39 166.4 404 46.3
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 6.1e-38 163.3 624 41.7
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.0e-37 160.6 624 33.7
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 6.7e-37 159.8 545 35.8
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 2.6e-36 157.9 505 30.9
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 4.4e-36 157.1 582 29.2
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 1.7e-35 155.2 570 30.5
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 2.8e-35 154.5 505 30.7
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 3.7e-35 154.1 626 28.6
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 8.2e-35 152.9 571 32.0
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 8.2e-35 152.9 628 28.2
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 1.4e-34 152.1 623 27.9
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 4.1e-34 150.6 196 48.0
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 9.1e-34 149.4 623 27.6
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 2.0e-33 148.3 632 29.0
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 3.5e-33 147.5 574 39.5
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 1.0e-32 146.0 571 33.5
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 6.5e-32 143.3 495 30.5
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 5.5e-31 140.2 580 29.0
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 7.2e-31 139.8 587 33.2
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 9.4e-31 139.4 618 28.6
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 3.6e-30 137.5 617 28.5
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 3.6e-30 137.5 563 37.3
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 1.4e-26 125.6 530 34.2
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.7e-24 118.6 203 43.3
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 1.5e-23 115.5 576 28.0
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 1.5e-23 115.5 560 30.7
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 3.3e-23 114.4 569 33.7
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.8e-22 111.3 203 37.9
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.2e-20 105.9 622 31.0
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 1.4e-18 99.0 473 32.1
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 1.2e-17 95.9 504 27.4
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 1.2e-17 95.9 196 36.2
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 8.6e-16 89.7 116 49.1
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 4.7e-14 84.0 175 36.0
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 8.0e-14 83.2 390 33.3
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 1.2e-12 79.3 628 30.9
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 1.2e-12 79.3 578 33.0
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.3e-11 75.9 569 22.7
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.3e-11 75.9 633 27.2
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 4.9e-11 73.9 308 27.9
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.1e-10 72.8 518 25.5
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 3.2e-10 71.2 572 29.4
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 4.1e-10 70.9 203 31.5
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 4.1e-10 70.9 173 30.1
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 7.0e-10 70.1 626 26.5
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.2e-09 69.3 116 38.8
BolC3t14044H Brassica oleracea HOM05D001827 ORTHO05D001790 4.6e-09 67.4 626 31.2
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 1.0e-08 66.2 639 21.6
Thhalv10012934m.g Eutrema salsugineum HOM05D001827 ORTHO05D001790 1.3e-08 65.9 203 31.5
Phvul.008G279900 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 1.7e-08 65.5 643 27.5
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 3.9e-08 64.3 631 22.2
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 5.0e-08 63.9 628 28.5
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 8.6e-08 63.2 437 24.9
C09p46840 Brassica napus HOM05D001827 ORTHO05D001790 1.1e-07 62.8 511 33.9
BolC9t57534H Brassica oleracea HOM05D001827 ORTHO05D001790 1.1e-07 62.8 511 33.9
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 1.1e-07 62.8 586 21.2
Lj8C179T7 Lonicera japonica HOM05D001827 ORTHO05D001790 1.1e-07 62.8 130 34.6
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 1.1e-07 62.8 636 25.3
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 2.5e-07 61.6 639 23.5
AUR62016893 Chenopodium quinoa HOM05D022647 ORTHO05D005456 2.5e-07 61.6 87 49.4
AUR62044563 Chenopodium quinoa HOM05D022647 ORTHO05D005456 2.5e-07 61.6 87 49.4
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 2.5e-07 61.6 441 22.0
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 4.3e-07 60.8 87 48.3
Medtr3g060660 Medicago truncatula HOM05D001827 ORTHO05D001790 5.6e-07 60.5 316 23.7
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 9.5e-07 59.7 351 23.4
HPP92_020563 Vanilla planifolia HOM05D001827 ORTHO05D001790 1.2e-06 59.3 167 29.3
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.6e-06 58.9 87 48.3
SEGI_23448 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.6e-06 58.9 267 26.2
Oeu005481.1 Olea europaea HOM05D001827 ORTHO05D001790 3.6e-06 57.8 523 27.9
AL8G31440 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 4.7e-06 57.4 640 31.9
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 4.7e-06 57.4 639 21.6
CARHR269240 Cardamine hirsuta HOM05D001827 ORTHO05D001790 6.2e-06 57.0 508 37.2
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 8.0e-06 56.6 655 24.1


User provided reference genes

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