Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 8.2e-84 313.5 143 100.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.2e-47 193.4 131 66.4
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 6.8e-46 187.6 94 87.2
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 8.8e-46 187.2 95 86.3
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 8.8e-46 187.2 95 86.3
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 8.8e-46 187.2 95 87.4
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.2e-45 186.8 117 74.4
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.5e-45 186.4 134 67.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 2.6e-45 185.7 107 80.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.6e-45 185.7 96 84.4
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 2.6e-45 185.7 96 84.4
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 5.7e-45 184.5 93 88.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 7.5e-45 184.1 96 83.3
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.3e-44 183.3 94 85.1
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.3e-44 183.3 99 80.8
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.3e-44 183.3 96 83.3
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 2.8e-44 182.2 119 72.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.8e-44 181.4 91 87.9
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 4.8e-44 181.4 94 86.2
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 4.8e-44 181.4 144 61.1
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.1e-43 180.3 123 69.9
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.4e-43 179.9 93 84.9
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 2.4e-43 179.1 120 68.3
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.1e-43 178.7 116 70.7
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.1e-43 178.3 93 84.9
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 5.4e-43 177.9 126 65.9
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 7.0e-43 177.6 97 81.4
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 7.0e-43 177.6 96 81.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 9.1e-43 177.2 95 81.1
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 9.1e-43 177.2 94 84.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.6e-42 176.4 108 73.1
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 2.0e-42 176.0 96 80.2
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 2.0e-42 176.0 92 85.9
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 3.5e-42 175.3 94 83.0
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.5e-42 174.9 97 82.5
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 5.9e-42 174.5 85 87.1
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 7.7e-42 174.1 124 70.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.7e-42 174.1 135 63.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.3e-41 173.3 112 73.2
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.3e-41 173.3 94 80.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.3e-41 173.3 126 64.3
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.7e-41 172.9 122 66.4
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.3e-41 172.6 93 81.7
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.9e-41 172.2 130 65.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.9e-41 172.2 130 65.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 3.8e-41 171.8 98 82.7
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 5.0e-41 171.4 90 82.2
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 5.0e-41 171.4 98 78.6
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 8.6e-41 170.6 96 79.2
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 8.6e-41 170.6 95 77.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.1e-40 170.2 93 79.6
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 1.1e-40 170.2 93 77.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.1e-40 170.2 97 78.4
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-40 170.2 97 78.4
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-40 170.2 97 78.4
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.9e-40 169.5 94 78.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.9e-40 169.5 121 66.1
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.5e-40 169.1 97 77.3
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 2.5e-40 169.1 110 70.9
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 2.5e-40 169.1 98 77.6
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 3.3e-40 168.7 87 85.1
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.3e-40 168.7 80 87.5
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 5.5e-40 167.9 94 77.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 9.5e-40 167.2 95 76.8
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 2.1e-39 166.0 97 78.4
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 6.1e-39 164.5 133 59.4
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 8.0e-39 164.1 161 54.0
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 8.0e-39 164.1 119 67.2
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.8e-38 162.9 95 74.7
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 2.3e-38 162.5 106 68.9
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.3e-38 162.5 82 84.1
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 3.0e-38 162.2 94 75.5
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 6.8e-38 161.0 72 95.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 6.8e-38 161.0 81 84.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 2.0e-37 159.5 88 78.4
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 7.5e-37 157.5 93 75.3
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.7e-36 156.4 118 62.7
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 2.4e-35 152.5 122 59.8
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 9.2e-35 150.6 86 74.4
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 1.2e-34 150.2 91 70.3
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 5.9e-34 147.9 197 44.2
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 7.8e-34 147.5 198 43.9
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 9.5e-32 140.6 89 66.3
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.8e-31 139.0 81 71.6
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 3.0e-30 135.6 171 45.6
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.0e-29 132.9 96 59.4
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 4.3e-24 115.2 55 85.5
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 3.6e-23 112.1 51 90.2
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 5.2e-22 108.2 51 90.2
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 1.2e-21 107.1 51 88.2
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 2.6e-21 105.9 52 86.5
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 4.4e-21 105.1 96 57.3
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 3.4e-13 79.0 78 56.4
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.7e-12 75.5 79 43.0
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 2.4e-11 72.8 70 51.4
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 2.4e-11 72.8 34 79.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.4e-11 72.8 85 38.8
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.2e-11 72.4 41 75.6
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.1e-10 69.7 79 43.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.0e-09 67.4 79 40.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.3e-09 67.0 84 36.9
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.7e-09 66.6 87 36.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.3e-09 66.2 80 38.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.0e-09 65.9 86 37.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.0e-09 65.9 86 36.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.0e-09 65.9 84 35.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.9e-09 65.5 88 34.1
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.9e-09 65.5 92 37.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 3.9e-09 65.5 87 37.9
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 3.9e-09 65.5 77 40.3
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 6.6e-09 64.7 93 37.6
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 6.6e-09 64.7 88 35.2
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.6e-09 64.7 88 39.8
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 6.6e-09 64.7 79 38.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.1e-08 63.9 88 38.6
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.1e-08 63.9 88 34.1
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.5e-08 63.5 82 39.0
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.9e-08 63.2 87 34.5
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.9e-08 63.2 90 36.7
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 2.5e-08 62.8 80 37.5
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.5e-08 62.8 79 35.4
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 3.3e-08 62.4 79 38.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 4.3e-08 62.0 80 36.2
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 4.3e-08 62.0 87 34.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 5.6e-08 61.6 87 32.2
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 5.6e-08 61.6 90 33.3
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.6e-08 61.6 79 38.0
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.6e-08 61.6 79 38.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 5.6e-08 61.6 88 36.4
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 9.5e-08 60.8 79 38.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 9.5e-08 60.8 86 33.7
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 9.5e-08 60.8 85 34.1
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.2e-07 60.5 91 31.9
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.2e-07 60.5 77 37.7
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.2e-07 60.5 80 37.5
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 1.2e-07 60.5 88 34.1
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.2e-07 60.5 87 33.3
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.6e-07 60.1 98 33.7
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.6e-07 60.1 88 36.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 1.6e-07 60.1 79 36.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.1e-07 59.7 79 36.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.1e-07 59.7 79 36.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.1e-07 59.7 79 35.4
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.8e-07 59.3 90 32.2
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.8e-07 59.3 88 38.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.6e-07 58.9 79 35.4
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.7e-07 58.5 91 30.8
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 4.7e-07 58.5 87 35.6
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.7e-07 58.5 91 34.1
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 4.7e-07 58.5 101 33.7
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 4.7e-07 58.5 88 33.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 6.2e-07 58.2 77 37.7
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 6.2e-07 58.2 79 35.4
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 6.2e-07 58.2 79 35.4
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 8.1e-07 57.8 87 35.6
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.1e-06 57.4 87 33.3
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.1e-06 57.4 81 34.6
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.1e-06 57.4 86 32.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 1.8e-06 56.6 91 33.0
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 3.1e-06 55.8 98 31.6
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 4.0e-06 55.5 79 34.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 5.2e-06 55.1 97 33.0
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 6.8e-06 54.7 87 31.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.9e-06 54.3 87 34.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 8.9e-06 54.3 79 34.2
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 8.9e-06 54.3 87 32.2


User provided reference genes

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