Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 8.4e-73 276.9 141 100.0
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 2.1e-31 139.4 138 57.2
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 3.0e-30 135.6 135 59.3
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 2.5e-29 132.5 118 60.2
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 3.3e-29 132.1 137 51.1
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 5.9e-26 121.3 123 50.4
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 1.7e-25 119.8 124 53.2
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 2.2e-25 119.4 134 53.7
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 6.5e-25 117.9 138 48.6
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 1.4e-24 116.7 118 49.2
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 1.4e-24 116.7 109 58.7
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 4.2e-24 115.2 103 62.1
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 1.2e-23 113.6 139 47.5
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 1.2e-23 113.6 124 54.0
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 1.2e-23 113.6 131 45.8
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 3.6e-23 112.1 137 51.1
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 2.3e-22 109.4 105 52.4
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 3.0e-22 109.0 73 68.5
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 6.7e-22 107.8 120 50.8
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 6.7e-22 107.8 127 52.0
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 6.7e-22 107.8 140 45.0
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 8.8e-22 107.5 141 46.1
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 1.1e-21 107.1 118 47.5
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.5e-21 106.7 146 47.9
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 2.0e-21 106.3 124 48.4
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 3.3e-21 105.5 134 46.3
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 4.4e-21 105.1 123 43.1
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 5.7e-21 104.8 123 45.5
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 7.4e-21 104.4 128 46.9
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.3e-20 103.6 132 44.7
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 2.2e-20 102.8 143 44.1
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.8e-20 102.4 138 42.8
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 4.8e-20 101.7 107 53.3
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 6.3e-20 101.3 102 54.9
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.8e-19 99.8 110 50.0
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 2.4e-19 99.4 126 42.9
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 3.1e-19 99.0 142 43.0
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 4.1e-19 98.6 116 44.8
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 4.1e-19 98.6 116 43.1
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 5.3e-19 98.2 107 51.4
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.5e-18 96.7 105 50.5
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 7.7e-18 94.4 105 50.5
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 1.3e-17 93.6 102 51.0
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 5.0e-17 91.7 139 41.7
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 8.5e-17 90.9 125 45.6
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 2.5e-16 89.4 135 38.5
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 3.2e-16 89.0 135 37.8
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 9.4e-16 87.4 153 41.2
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 9.4e-16 87.4 122 42.6
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.2e-15 87.0 77 55.8
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 4.7e-15 85.1 102 44.1
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 7.9e-15 84.3 105 41.0
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 1.0e-14 84.0 102 44.1
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 4.8e-12 75.1 117 42.7
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 8.2e-12 74.3 94 46.8
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 1.2e-10 70.5 76 46.1
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 1.6e-10 70.1 105 36.2
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 6.5e-09 64.7 72 44.4
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 6.5e-09 64.7 104 32.7
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.5e-09 64.7 136 33.1
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 8.5e-09 64.3 111 40.5
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.5e-08 63.5 133 36.8
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.5e-08 63.5 133 36.8
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 2.5e-08 62.8 76 42.1
SEGI_15898 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 2.5e-08 62.8 133 37.6
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 4.2e-08 62.0 113 33.6
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 5.5e-08 61.6 111 35.1
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 1.6e-07 60.1 80 41.2
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.6e-07 60.1 136 30.9
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 2.7e-07 59.3 107 37.4
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 3.6e-07 58.9 118 35.6
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 3.6e-07 58.9 79 39.2
Oeu063395.1 Olea europaea HOM05D002803 ORTHO05D003089 3.6e-07 58.9 85 36.5
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 4.7e-07 58.5 74 37.8
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 4.7e-07 58.5 73 42.5
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 4.7e-07 58.5 73 42.5
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 4.7e-07 58.5 108 37.0
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 4.7e-07 58.5 114 34.2
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 6.1e-07 58.2 122 32.8
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 6.1e-07 58.2 115 37.4
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 6.1e-07 58.2 125 34.4
Zm00001eb252480 Zea mays HOM05D002803 ORTHO05D003089 6.1e-07 58.2 113 34.5
Cpa.g.sc48.126 Carica papaya HOM05D010455 ORTHO05D010927 8.0e-07 57.8 89 36.0
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 8.0e-07 57.8 81 40.7
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 1.0e-06 57.4 73 37.0
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 1.0e-06 57.4 73 41.1
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 1.0e-06 57.4 39 56.4
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 1.0e-06 57.4 40 55.0
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.0e-06 57.4 91 37.4
CiPaw.03G068500 Carya illinoinensis HOM05D008294 ORTHO05D010468 1.4e-06 57.0 99 41.4
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 1.4e-06 57.0 128 36.7
Phvul.003G177700 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 1.4e-06 57.0 113 35.4
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.8e-06 56.6 124 33.9
EL10Ac5g11244 Beta vulgaris HOM05D002803 ORTHO05D003089 1.8e-06 56.6 118 29.7
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 1.8e-06 56.6 79 38.0
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 1.8e-06 56.6 70 41.4
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 1.8e-06 56.6 40 50.0
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 1.8e-06 56.6 134 28.4
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 1.8e-06 56.6 91 35.2
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 2.3e-06 56.2 125 32.0
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 2.3e-06 56.2 40 50.0
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 2.3e-06 56.2 68 41.2
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 2.3e-06 56.2 51 47.1
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 2.3e-06 56.2 81 39.5
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 2.3e-06 56.2 94 36.2
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 2.3e-06 56.2 114 33.3
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 2.3e-06 56.2 93 38.7
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 3.0e-06 55.8 77 37.7
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 3.0e-06 55.8 123 35.0
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 3.0e-06 55.8 91 35.2
PGSC0003DMG400004055 Solanum tuberosum HOM05D002803 ORTHO05D003089 3.0e-06 55.8 140 32.9
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 3.0e-06 55.8 79 36.7
VMungo1309G1453 Vigna mungo HOM05D002803 ORTHO05D003089 3.0e-06 55.8 117 34.2
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 4.0e-06 55.5 136 32.4
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 4.0e-06 55.5 65 38.5
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 4.0e-06 55.5 115 29.6
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 5.2e-06 55.1 42 47.6
Ciclev10022495m.g Citrus clementina HOM05D002803 ORTHO05D003089 5.2e-06 55.1 86 38.4
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 5.2e-06 55.1 76 40.8
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 5.2e-06 55.1 75 37.3
Os02g0711400 Oryza sativa ssp. japonica HOM05D002803 ORTHO05D003089 5.2e-06 55.1 39 53.8
Phvul.009G200800 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 5.2e-06 55.1 112 35.7
Sabra12G0042700 Salix brachista HOM05D002803 ORTHO05D003089 5.2e-06 55.1 86 38.4
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 5.2e-06 55.1 67 35.8
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea HOM05D002803 ORTHO05D003089 6.7e-06 54.7 75 42.7
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea HOM05D002803 ORTHO05D003089 6.7e-06 54.7 75 42.7
Cfa019832 Carpinus fangiana HOM05D002803 ORTHO05D003089 6.7e-06 54.7 123 30.9
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 6.7e-06 54.7 78 38.5
Nitab4.5_0000410g0140 Nicotiana tabacum HOM05D002803 ORTHO05D003089 6.7e-06 54.7 86 37.2
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 6.7e-06 54.7 35 62.9
Glyma.04G145700 Glycine max HOM05D002803 ORTHO05D003089 8.8e-06 54.3 112 35.7
Hma1.2p1_0595F.1_g186020 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 8.8e-06 54.3 93 36.6
MBI16_g46922_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 8.8e-06 54.3 127 30.7
Manes.01G021300 Manihot esculenta HOM05D002803 ORTHO05D003089 8.8e-06 54.3 94 39.4
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 8.8e-06 54.3 87 33.3
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 8.8e-06 54.3 117 29.9
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 8.8e-06 54.3 117 29.9
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 8.8e-06 54.3 118 32.2
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 8.8e-06 54.3 41 46.3


User provided reference genes

Program Settings