Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 7.4e-39 163.3 78 100.0
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.9e-34 148.7 78 88.5
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 7.2e-34 146.7 78 88.5
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 2.7e-33 144.8 78 87.2
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 4.7e-33 144.1 78 83.3
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 6.1e-33 143.7 78 85.9
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 2.3e-32 141.7 78 82.1
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 4.0e-32 141.0 78 82.1
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 6.8e-32 140.2 78 80.8
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 8.8e-32 139.8 76 84.2
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 1.2e-31 139.4 78 79.5
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 1.2e-31 139.4 76 82.9
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 1.5e-31 139.0 78 80.8
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 2.0e-31 138.7 72 84.7
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 2.0e-31 138.7 76 85.5
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 2.6e-31 138.3 78 78.2
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 3.4e-31 137.9 78 83.3
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 4.4e-31 137.5 76 80.3
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 4.4e-31 137.5 76 80.3
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 5.7e-31 137.1 72 84.7
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 5.7e-31 137.1 78 83.3
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 7.5e-31 136.7 78 78.2
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 7.5e-31 136.7 78 80.8
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 9.8e-31 136.3 78 80.8
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 9.8e-31 136.3 76 78.9
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 1.7e-30 135.6 72 84.7
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 1.7e-30 135.6 72 84.7
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 1.7e-30 135.6 72 84.7
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.8e-30 134.8 78 76.9
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 81.9
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 3.7e-30 134.4 72 81.9
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 6.3e-30 133.7 75 81.3
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 1.1e-29 132.9 77 77.9
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 1.1e-29 132.9 78 78.2
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 1.1e-29 132.9 78 74.4
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 1.1e-29 132.9 78 74.4
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 2.4e-29 131.7 69 84.1
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 4.1e-29 131.0 69 84.1
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 4.1e-29 131.0 71 81.7
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 4.1e-29 131.0 71 81.7
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 5.4e-29 130.6 74 78.4
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 7.0e-29 130.2 72 79.2
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 1.2e-28 129.4 72 79.2
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 1.2e-28 129.4 76 76.3
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 1.2e-28 129.4 77 75.3
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 1.6e-28 129.0 71 77.5
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 1.6e-28 129.0 76 76.3
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 2.0e-28 128.6 72 77.8
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 4.5e-28 127.5 72 80.6
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 5.9e-28 127.1 76 73.7
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.0e-27 126.3 69 84.1
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 79.2
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 79.2
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 79.2
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 79.2
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 2.2e-27 125.2 72 79.2
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 2.9e-27 124.8 72 77.8
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 2.9e-27 124.8 72 77.8
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 3.8e-27 124.4 69 82.6
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 5.0e-27 124.0 72 73.6
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 5.0e-27 124.0 72 75.0
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 6.5e-27 123.6 72 75.0
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 6.5e-27 123.6 69 81.2
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 8.5e-27 123.2 78 69.2
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 1.5e-26 122.5 72 77.8
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 1.9e-26 122.1 66 83.3
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 1.9e-26 122.1 72 72.2
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 2.5e-26 121.7 78 69.2
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 3.2e-26 121.3 72 77.8
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 3.2e-26 121.3 72 72.2
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 9.4e-26 119.8 72 69.4
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.6e-25 119.0 71 70.4
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 2.7e-25 118.2 71 73.2
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 3.6e-25 117.9 71 69.0
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 3.6e-25 117.9 74 67.6
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 3.6e-25 117.9 59 89.8
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 6.1e-25 117.1 72 76.4
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 6.1e-25 117.1 72 66.7
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 1.4e-24 115.9 70 72.9
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.0e-24 114.8 62 80.6
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 3.0e-24 114.8 72 70.8
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.0e-24 114.8 72 66.7
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 3.0e-24 114.8 72 66.7
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 6.8e-24 113.6 71 70.4
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 8.8e-24 113.2 71 69.0
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.8e-24 113.2 73 61.6
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 1.5e-23 112.5 71 67.6
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 2.0e-23 112.1 71 67.6
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 3.4e-23 111.3 78 66.7
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 4.4e-23 110.9 71 67.6
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 4.4e-23 110.9 71 67.6
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 4.4e-23 110.9 72 66.7
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 5.7e-23 110.5 67 71.6
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 5.7e-23 110.5 69 68.1
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 5.7e-23 110.5 69 68.1
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 9.8e-23 109.8 66 72.7
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 9.8e-23 109.8 66 72.7
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 9.8e-23 109.8 66 72.7
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 4.9e-22 107.5 60 75.0
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.1e-21 106.3 72 62.5
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.8e-21 105.5 72 62.5
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.8e-21 105.5 72 62.5
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.8e-21 105.5 72 65.3
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.8e-21 105.5 72 65.3
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.8e-21 105.5 72 65.3
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 4.1e-21 104.4 72 61.1
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 7.0e-21 103.6 72 59.7
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.6e-20 102.4 72 62.5
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 1.6e-20 102.4 69 62.3
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 2.7e-20 101.7 60 71.7
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 5.9e-20 100.5 69 60.9
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 1.7e-19 99.0 58 79.3
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 2.3e-19 98.6 70 55.7
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 2.9e-19 98.2 61 68.9
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.5e-18 95.9 65 63.1
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 6.1e-17 90.5 66 63.6
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.4e-16 89.4 48 79.2
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.0e-08 63.2 70 45.7
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.4e-08 62.8 70 41.4
TAR371G0913 Trochodendron aralioides HOM05D006437 ORTHO05D007973 6.8e-08 60.5 31 77.4
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 2.0e-07 58.9 71 38.0
TAR371G0323 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.7e-06 55.8 30 73.3


User provided reference genes

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