Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g08060 Coffea canephora HOM05D003413 ORTHO05D004197 4.0e-133 478.0 230 100.0
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 2.7e-44 183.0 191 55.0
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 7.8e-44 181.4 168 59.5
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 1.7e-43 180.3 170 58.2
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 1.7e-43 180.3 168 58.3
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 2.3e-43 179.9 168 58.9
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 3.0e-43 179.5 168 58.3
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 3.0e-43 179.5 172 57.6
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 3.9e-43 179.1 168 57.7
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 3.9e-43 179.1 168 57.7
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.9e-43 179.1 168 57.7
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 3.9e-43 179.1 168 58.3
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 3.9e-43 179.1 170 57.6
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 6.6e-43 178.3 170 57.6
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 6.6e-43 178.3 170 57.6
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 6.6e-43 178.3 173 56.6
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 6.6e-43 178.3 170 57.1
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 6.6e-43 178.3 166 58.4
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 8.6e-43 177.9 170 56.5
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 8.6e-43 177.9 173 56.6
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 8.6e-43 177.9 168 57.7
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 1.1e-42 177.6 167 58.1
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 1.1e-42 177.6 167 57.5
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 1.1e-42 177.6 170 57.6
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 1.5e-42 177.2 170 57.6
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 1.5e-42 177.2 168 57.7
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 1.5e-42 177.2 183 53.6
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 1.5e-42 177.2 167 57.5
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 1.5e-42 177.2 168 57.7
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 1.5e-42 177.2 170 57.6
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 1.5e-42 177.2 170 57.6
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 1.5e-42 177.2 170 57.6
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 1.9e-42 176.8 172 57.0
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.9e-42 176.8 164 59.1
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 2.5e-42 176.4 177 55.4
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 2.5e-42 176.4 172 57.0
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.5e-42 176.4 170 57.6
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.5e-42 176.4 170 57.6
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.5e-42 176.4 170 57.6
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 2.5e-42 176.4 191 53.4
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 2.5e-42 176.4 170 57.6
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 3.3e-42 176.0 165 58.8
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 3.3e-42 176.0 170 57.1
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 3.3e-42 176.0 170 57.1
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 3.3e-42 176.0 168 57.7
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 3.3e-42 176.0 170 57.6
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 3.3e-42 176.0 167 56.9
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 3.3e-42 176.0 170 57.6
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 3.3e-42 176.0 168 57.7
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 3.3e-42 176.0 169 56.8
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 4.3e-42 175.6 167 57.5
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 4.3e-42 175.6 170 55.9
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.3e-42 175.6 170 57.1
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 4.3e-42 175.6 166 58.4
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 4.3e-42 175.6 172 56.4
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 5.6e-42 175.3 166 57.8
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 7.3e-42 174.9 168 57.7
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 7.3e-42 174.9 172 56.4
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 7.3e-42 174.9 168 58.3
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 7.3e-42 174.9 170 57.1
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 7.3e-42 174.9 165 58.2
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 7.3e-42 174.9 165 58.2
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 9.5e-42 174.5 181 54.1
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 9.5e-42 174.5 167 56.3
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 9.5e-42 174.5 170 57.1
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 9.5e-42 174.5 170 57.1
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 9.5e-42 174.5 165 58.2
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 9.5e-42 174.5 174 57.5
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 1.2e-41 174.1 170 56.5
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.6e-41 173.7 167 56.3
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.6e-41 173.7 170 57.1
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 1.6e-41 173.7 168 56.5
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 1.6e-41 173.7 167 56.3
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 1.6e-41 173.7 167 56.3
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 1.6e-41 173.7 165 56.4
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.1e-41 173.3 170 56.5
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.1e-41 173.3 170 56.5
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 2.1e-41 173.3 165 57.0
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.8e-41 172.9 168 57.1
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.8e-41 172.9 168 57.1
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 2.8e-41 172.9 172 56.4
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 2.8e-41 172.9 168 56.5
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 2.8e-41 172.9 167 56.9
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 3.6e-41 172.6 170 55.3
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 3.6e-41 172.6 167 55.7
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 3.6e-41 172.6 168 56.5
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 3.6e-41 172.6 188 52.1
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 4.7e-41 172.2 165 56.4
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 4.7e-41 172.2 167 56.9
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 4.7e-41 172.2 168 57.1
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 6.2e-41 171.8 168 56.5
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 6.2e-41 171.8 167 54.5
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 6.2e-41 171.8 167 54.5
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 8.1e-41 171.4 168 57.1
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 8.1e-41 171.4 172 55.2
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 8.1e-41 171.4 167 55.7
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.4e-40 170.6 165 55.8
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 1.4e-40 170.6 165 55.8
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 2.3e-40 169.9 165 56.4
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 6.8e-40 168.3 194 50.0
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 6.8e-40 168.3 169 55.6
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.5e-39 167.2 168 56.0
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 1.5e-39 167.2 164 57.3
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 3.4e-39 166.0 178 52.8
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.8e-39 165.2 165 55.8
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.8e-39 165.2 165 55.8
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 5.8e-39 165.2 165 55.8
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 7.5e-39 164.9 165 55.2
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 9.9e-39 164.5 165 55.2
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 2.9e-38 162.9 165 54.5
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 2.9e-38 162.9 207 46.9
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 2.9e-38 162.9 164 55.5
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 3.7e-38 162.5 164 53.0
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 8.3e-38 161.4 204 47.5
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 1.1e-37 161.0 200 47.5
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 1.9e-37 160.2 213 45.5
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 9.2e-37 157.9 167 52.1
SHI04151 Sapria himalayana HOM05D003413 ORTHO05D004197 1.2e-36 157.5 150 58.7
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 1.6e-36 157.1 161 55.3
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 2.7e-36 156.4 165 52.7
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 6.0e-36 155.2 163 53.4
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 1.0e-35 154.5 215 43.7
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.3e-35 154.1 206 46.1
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 6.6e-35 151.8 168 50.6
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 1.1e-34 151.0 165 50.3
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 1.9e-34 150.2 165 51.5
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 2.1e-33 146.7 179 45.3
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 4.7e-33 145.6 179 46.9
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 1.8e-32 143.7 155 50.3
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 4.0e-32 142.5 164 48.8
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 5.2e-32 142.1 173 43.4
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 1.5e-31 140.6 121 62.0
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 2.0e-31 140.2 254 37.4
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 2.4e-29 133.3 119 60.5
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 5.4e-29 132.1 163 44.8
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 2.3e-27 126.7 161 44.1
Ciclev10032238m.g Citrus clementina HOM05D003413 ORTHO05D004197 6.6e-27 125.2 263 37.3
Sopen03g016120 Solanum pennellii HOM05D003413 ORTHO05D004197 6.9e-24 115.2 102 58.8
PGSC0003DMG400014972 Solanum tuberosum HOM05D003413 ORTHO05D004197 2.0e-23 113.6 85 67.1
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 5.8e-23 112.1 107 56.1
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 3.8e-22 109.4 109 53.2
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 1.1e-21 107.8 155 47.1
TPR.G26137 Trifolium pratense HOM05D003413 ORTHO05D004197 2.1e-20 103.6 180 41.7
FAN07G1700 Fragaria x ananassa HOM05D003413 ORTHO05D004197 2.7e-20 103.2 80 63.8
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 4.6e-20 102.4 154 42.2
AagrBONN_evm.TU.Sc2ySwM_117.841 Anthoceros agrestis HOM05D003413 ORTHO05D004197 7.3e-18 95.1 105 50.5
Lsat_1_v5_gn_3_130100 Lactuca sativa HOM05D003413 ORTHO05D013393 1.2e-15 87.8 87 57.5
QL05p055614 Quercus lobata HOM05D003413 ORTHO05D004197 7.9e-12 75.1 59 66.1
BolC8t47970H Brassica oleracea HOM05D003413 ORTHO05D004197 1.0e-11 74.7 66 57.6
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 2.3e-11 73.6 146 34.2
Cfa025082 Carpinus fangiana HOM05D003413 ORTHO05D124667 2.5e-10 70.1 93 44.1
Psat6g126880 Pisum sativum HOM05D003413 ORTHO05D004197 7.4e-10 68.6 111 36.0
Sopen03g016110 Solanum pennellii HOM05D003413 ORTHO05D004197 8.1e-09 65.1 47 63.8
Lalb_Chr06g0172271 Lupinus albus HOM05D003413 ORTHO05D004197 1.4e-08 64.3 49 61.2
QL03p054247 Quercus lobata HOM05D003413 ORTHO05D004197 2.4e-08 63.5 49 61.2
HanXRQChr06g0180701 Helianthus annuus HOM05D003413 ORTHO05D004197 3.1e-08 63.2 50 60.0
Lsat_1_v5_gn_3_6341 Lactuca sativa HOM05D002314 ORTHO05D002538 3.4e-07 59.7 107 40.2
Actinidia09660 Actinidia chinensis HOM05D003413 ORTHO05D004197 4.5e-07 59.3 47 61.7
BraA01t00949Z Brassica rapa HOM05D003413 ORTHO05D004197 7.6e-07 58.5 47 59.6
BraA03t11858Z Brassica rapa HOM05D003413 ORTHO05D004197 7.6e-07 58.5 47 59.6
Lsat_1_v5_gn_2_81941 Lactuca sativa HOM05D002314 ORTHO05D002538 2.2e-06 57.0 56 53.6
MELO3C011880.2 Cucumis melo HOM05D003413 ORTHO05D004197 6.4e-06 55.5 47 57.4
Psat6g126800 Pisum sativum HOM05D003413 ORTHO05D004197 8.4e-06 55.1 42 61.9


User provided reference genes

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