Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 4.0e-151 538.1 280 100.0
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 5.0e-69 265.4 269 56.5
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 3.6e-67 259.2 285 53.0
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 4.0e-66 255.8 280 55.0
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 6.8e-66 255.0 283 52.7
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.7e-65 251.9 263 54.4
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.7e-65 251.9 263 54.4
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 2.2e-64 250.0 285 55.4
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.8e-64 248.8 283 53.4
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 4.1e-63 245.7 285 50.9
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 4.1e-63 245.7 266 54.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 9.1e-63 244.6 266 53.8
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 5.0e-61 238.8 266 52.6
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.5e-60 236.5 284 50.0
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 7.2e-60 235.0 262 51.5
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 9.4e-60 234.6 288 49.3
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.6e-59 233.8 285 50.9
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.3e-58 229.9 268 49.6
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 6.8e-58 228.4 222 58.1
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 8.8e-58 228.0 287 48.8
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.0e-57 226.9 280 51.1
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 4.4e-57 225.7 283 48.8
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 5.7e-57 225.3 287 48.8
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 7.5e-57 224.9 287 48.4
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 7.5e-57 224.9 282 50.0
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 1.7e-56 223.8 285 49.8
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.7e-56 223.8 287 50.2
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.2e-56 223.4 281 49.1
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 3.7e-56 222.6 280 50.0
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.4e-55 220.7 282 48.6
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.8e-55 220.3 264 50.8
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.2e-54 217.6 286 47.6
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.6e-54 217.2 290 50.0
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 4.5e-54 215.7 281 45.9
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 5.9e-54 215.3 275 47.3
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 5.9e-54 215.3 281 49.1
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.3e-53 213.4 289 46.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.3e-53 213.4 272 48.9
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.3e-53 213.4 334 43.1
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 2.9e-53 213.0 280 47.5
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 3.8e-53 212.6 274 50.0
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.1e-52 211.1 287 46.0
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.5e-52 209.9 278 46.8
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.5e-52 209.9 257 51.8
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 3.3e-52 209.5 285 46.0
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.2e-52 208.4 285 46.0
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 7.2e-52 208.4 287 45.3
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 7.2e-52 208.4 289 48.1
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.2e-51 207.6 283 48.8
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.1e-51 206.8 286 48.6
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.8e-51 206.5 256 53.1
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 4.7e-51 205.7 272 45.6
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 4.7e-51 205.7 269 50.2
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 6.1e-51 205.3 288 44.4
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 8.0e-51 204.9 280 45.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 8.0e-51 204.9 265 49.8
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 8.0e-51 204.9 288 47.2
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.0e-50 204.5 284 49.6
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.8e-50 203.8 289 46.4
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 3.0e-50 203.0 288 44.4
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 8.9e-50 201.4 285 46.3
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.2e-49 201.1 291 46.0
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.5e-49 200.7 285 48.4
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.5e-49 200.7 265 49.1
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.5e-49 200.7 289 45.3
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 2.6e-49 199.9 288 45.1
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.6e-49 199.9 287 46.3
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 4.4e-49 199.1 284 46.5
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.7e-48 197.2 273 46.9
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 2.9e-48 196.4 288 47.2
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 3.7e-48 196.1 270 45.9
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 4.9e-48 195.7 284 46.5
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 6.3e-48 195.3 273 46.5
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 2.4e-47 193.4 281 45.6
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.4e-47 193.4 288 43.4
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 4.1e-47 192.6 283 42.8
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 7.0e-47 191.8 275 46.2
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.0e-46 190.3 281 44.8
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 4.6e-46 189.1 291 42.3
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 4.6e-46 189.1 291 42.3
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 4.6e-46 189.1 266 44.4
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 5.9e-46 188.7 283 45.6
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.9e-46 188.7 284 42.6
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 1.0e-45 188.0 289 43.3
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.7e-45 187.2 243 49.4
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.9e-45 186.4 279 45.5
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 8.6e-45 184.9 284 41.2
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.1e-44 184.5 246 43.5
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 1.1e-44 184.5 290 46.6
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 2.5e-44 183.3 193 55.4
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.3e-44 183.0 288 42.4
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 4.3e-44 182.6 282 42.9
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 7.3e-44 181.8 284 43.3
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.2e-43 181.0 313 43.8
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 8.9e-42 174.9 280 43.2
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.2e-41 174.5 203 53.7
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 9.8e-41 171.4 276 40.9
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 2.2e-40 170.2 285 42.8
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.9e-40 169.9 277 41.5
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 8.3e-40 168.3 277 41.5
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 8.3e-40 168.3 283 43.5
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 8.3e-40 168.3 278 41.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 9.2e-39 164.9 278 41.0
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 3.9e-37 159.5 278 39.6
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 5.0e-37 159.1 278 39.2
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 6.6e-37 158.7 253 42.7
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 8.6e-37 158.3 266 39.8
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 8.6e-37 158.3 266 39.8
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.5e-36 157.5 278 39.6
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.5e-36 157.5 278 39.6
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 3.6e-35 152.9 229 45.4
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 3.6e-35 152.9 136 58.8
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.8e-34 150.6 286 40.9
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.9e-31 140.6 248 42.7
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.7e-29 134.0 267 36.3
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 7.3e-28 128.6 280 37.1
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 9.9e-25 118.2 224 39.7
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.1e-23 114.8 284 34.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.9e-23 114.0 120 48.3
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.9e-20 104.0 143 43.4
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 7.3e-20 102.1 242 34.7
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.4e-18 97.8 253 33.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 8.9e-18 95.1 268 34.7
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.4e-15 87.8 266 28.2
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.9e-15 87.4 238 29.8
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 5.1e-13 79.3 266 28.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.3e-12 76.6 173 35.3
Actinidia36381 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.0e-06 55.8 82 40.2


User provided reference genes

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