Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 7.5e-94 347.8 275 100.0
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 4.7e-72 275.4 275 85.1
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.4e-71 273.9 275 84.7
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.5e-70 270.4 275 84.7
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 5.8e-70 268.5 266 85.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.9e-69 266.2 266 86.1
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.9e-69 265.4 275 83.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 6.4e-69 265.0 275 83.3
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.1e-68 264.2 275 83.6
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.1e-68 264.2 275 83.6
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.9e-68 263.5 266 86.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 3.2e-68 262.7 266 86.1
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.2e-68 262.3 271 83.4
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 7.1e-68 261.5 266 85.0
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 9.3e-68 261.2 266 75.9
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.2e-67 260.8 270 83.3
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.5e-67 259.2 275 82.5
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.8e-67 258.1 266 84.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.8e-67 258.1 266 84.2
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.0e-66 256.1 269 83.6
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.1e-66 255.4 268 83.6
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.7e-66 254.6 269 84.0
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.7e-66 254.6 269 84.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.1e-65 254.2 266 83.5
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.5e-65 253.8 271 82.7
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.5e-65 253.8 271 82.7
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.5e-65 253.1 266 83.8
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.3e-65 252.7 271 82.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 4.3e-65 252.3 267 83.1
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.3e-65 252.3 271 81.9
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 7.3e-65 251.5 266 84.2
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 9.6e-65 251.1 256 87.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.6e-64 250.4 277 82.7
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.1e-64 250.0 275 82.2
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 2.8e-64 249.6 266 81.2
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.6e-64 249.2 267 83.9
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.8e-64 248.8 276 83.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.2e-64 248.4 267 82.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 8.1e-64 248.1 268 82.8
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 1.1e-63 247.7 277 82.7
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 83.5
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 83.5
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.8e-63 246.9 267 82.0
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 1.8e-63 246.9 266 81.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.8e-63 246.9 275 79.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.4e-63 246.5 263 85.6
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 6.9e-63 245.0 275 81.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 9.0e-63 244.6 275 81.1
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 2.0e-62 243.4 275 80.7
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.0e-62 243.4 274 81.0
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.6e-62 243.0 266 82.3
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 4.4e-62 242.3 275 79.3
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 7.6e-62 241.5 275 80.0
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.3e-61 240.7 275 80.0
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.7e-61 240.4 275 78.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.7e-61 240.4 248 84.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 2.2e-61 240.0 275 79.6
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.9e-60 236.9 266 80.5
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.9e-60 236.9 267 79.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.9e-60 236.9 267 79.4
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.4e-60 236.5 270 79.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 3.2e-60 236.1 268 81.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 4.2e-60 235.7 249 85.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 9.3e-60 234.6 276 78.6
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 3.5e-59 232.6 244 86.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.6e-59 232.3 265 82.3
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 266 81.2
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.0e-58 229.6 275 77.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 3.0e-58 229.6 248 85.5
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 5.1e-58 228.8 267 82.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 8.7e-58 228.0 276 76.8
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.1e-57 227.6 249 82.3
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.9e-57 226.9 264 77.3
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.3e-57 226.1 276 72.5
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 5.6e-57 225.3 266 80.8
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 7.3e-57 224.9 276 74.6
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 9.6e-57 224.6 273 54.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.1e-56 223.4 269 78.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.8e-56 223.0 270 80.4
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.8e-56 223.0 264 74.2
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 6.2e-56 221.9 267 79.0
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 3.1e-55 219.5 257 80.2
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-54 217.6 243 85.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.5e-54 217.2 254 80.3
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.0e-54 216.9 277 45.5
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.4e-54 216.1 264 77.7
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.4e-54 216.1 269 76.2
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 5.8e-54 215.3 269 77.7
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 9.9e-54 214.5 272 75.0
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.3e-53 214.2 268 75.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.7e-53 213.8 257 80.2
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.9e-53 213.0 265 78.1
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.9e-53 213.0 268 77.2
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.1e-52 211.1 269 74.7
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.4e-52 210.7 270 74.8
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.4e-52 210.7 268 75.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.9e-52 210.3 268 75.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.9e-52 210.3 268 75.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.2e-52 209.5 273 74.7
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 4.2e-52 209.1 270 74.4
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 75.4
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.2e-52 209.1 268 75.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.5e-52 208.8 249 78.7
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 9.3e-52 208.0 263 76.0
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.2e-51 207.6 268 75.4
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.2e-51 207.6 268 75.0
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.6e-51 207.2 234 87.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.6e-51 207.2 264 73.1
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.6e-51 207.2 264 73.1
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 75.5
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 4.6e-51 205.7 268 75.0
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 7.9e-51 204.9 270 74.8
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 7.9e-51 204.9 270 74.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 7.9e-51 204.9 270 74.8
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.0e-50 204.5 268 75.0
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-50 204.5 268 74.3
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.0e-50 204.5 268 73.1
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 1.0e-50 204.5 276 74.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-50 203.8 268 75.0
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-50 203.4 270 74.4
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.3e-50 203.4 270 74.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-50 203.0 268 74.6
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.0e-50 203.0 229 87.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.1e-50 202.2 269 74.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-49 201.1 268 74.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.3e-49 199.5 231 85.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 4.3e-49 199.1 270 74.1
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 9.6e-49 198.0 268 74.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.8e-48 196.4 265 75.1
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 6.2e-48 195.3 258 75.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 8.1e-48 194.9 267 76.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.2e-46 191.0 233 82.4
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.2e-46 191.0 229 86.5
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.5e-46 190.7 262 74.8
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.0e-45 188.0 268 66.0
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.2e-45 186.8 264 69.7
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 2.9e-45 186.4 261 72.4
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 3.8e-45 186.0 263 72.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.2e-38 164.5 265 67.2
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 7.6e-38 161.8 268 56.3
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 3.2e-36 156.4 223 78.9
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-35 154.5 249 73.5
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 3.9e-34 149.4 208 82.2
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.3e-32 144.4 93 72.0
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 6.3e-32 142.1 83 80.7
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 9.0e-31 138.3 85 78.8
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.2e-30 137.9 267 57.7
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.4e-30 136.3 272 64.7
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.4e-30 136.3 284 64.1
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 7.7e-30 135.2 94 69.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.4e-26 124.4 205 77.6
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 6.3e-24 115.5 253 59.7
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.0e-22 110.5 86 68.6
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 3.8e-21 106.3 83 62.7
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 9.4e-20 101.7 82 57.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.8e-15 87.4 53 84.9
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 3.3e-09 66.6 257 56.0
arahy.Tifrunner.gnm1.ann1.VYJ8LR Arachis hypogaea HOM05D000094 ORTHO05D001056 2.4e-07 60.5 100 35.0
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 3.1e-07 60.1 106 35.8
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 2.0e-06 57.4 104 35.6
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 5.9e-06 55.8 63 54.0
FAN02G1773 Fragaria x ananassa HOM05D000094 ORTHO05D001056 7.7e-06 55.5 84 35.7


User provided reference genes

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