Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 3.9e-148 528.1 263 100.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 5.5e-102 374.8 225 78.2
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 4.6e-101 371.7 238 74.4
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.0e-99 366.3 256 71.1
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 1.7e-98 363.2 261 70.5
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 3.7e-98 362.1 253 69.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 1.4e-97 360.1 232 72.8
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.4e-97 359.4 239 72.0
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 9.1e-97 357.5 228 75.0
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.1e-97 357.5 246 70.7
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.2e-96 357.1 241 72.6
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 1.5e-96 356.7 241 72.6
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 3.4e-96 355.5 264 67.4
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.4e-96 355.5 265 69.4
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 4.5e-96 355.1 245 72.2
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 7.7e-96 354.4 244 71.7
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 7.7e-96 354.4 258 69.0
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.0e-95 354.0 241 71.4
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 1.0e-95 354.0 242 71.1
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.3e-95 353.6 260 67.3
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 5.0e-95 351.7 229 72.9
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 5.0e-95 351.7 268 63.4
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 8.5e-95 350.9 222 75.2
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 8.5e-95 350.9 255 67.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.1e-94 350.5 206 79.1
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.4e-94 350.1 198 82.3
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.9e-94 349.7 239 69.9
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 2.5e-94 349.4 259 66.8
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.2e-94 349.0 254 68.1
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.2e-94 349.0 239 69.5
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.2e-94 348.6 259 68.3
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.2e-94 348.6 255 67.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 5.5e-94 348.2 260 66.5
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.5e-94 348.2 247 70.9
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 5.5e-94 348.2 226 74.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 7.2e-94 347.8 243 70.0
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 7.2e-94 347.8 221 74.7
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 9.4e-94 347.4 251 69.3
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.2e-93 347.1 263 64.6
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 1.2e-93 347.1 242 71.5
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.6e-93 346.7 253 67.6
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 2.7e-93 345.9 264 66.7
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 7.9e-93 344.4 251 67.3
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 2.3e-92 342.8 219 74.4
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.3e-92 342.8 197 79.2
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 8.8e-92 340.9 260 67.3
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 8.8e-92 340.9 254 68.1
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.0e-91 339.7 252 65.5
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.0e-91 339.7 219 72.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.7e-91 338.2 207 73.9
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.7e-91 338.2 207 74.4
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 7.4e-91 337.8 207 73.9
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 7.4e-91 337.8 249 68.3
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 2.2e-90 336.3 260 66.5
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.2e-90 336.3 260 66.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.8e-90 335.9 267 64.8
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.8e-90 335.9 254 66.5
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 3.7e-90 335.5 265 65.3
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 3.7e-90 335.5 239 68.2
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.1e-89 334.0 259 68.0
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 1.1e-89 334.0 242 68.6
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.1e-89 334.0 211 74.4
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.4e-89 333.6 195 76.4
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.4e-89 332.8 260 64.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.1e-89 332.4 261 65.9
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 3.1e-89 332.4 245 67.8
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.2e-88 330.5 260 62.7
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.2e-88 330.5 203 72.9
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.2e-88 330.5 266 62.4
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.6e-88 330.1 206 74.8
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 3.5e-88 328.9 264 63.3
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 7.7e-88 327.8 273 60.1
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.7e-87 326.6 260 62.3
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.7e-87 326.6 262 62.2
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.9e-87 325.9 199 75.9
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 3.8e-87 325.5 242 65.7
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 6.5e-87 324.7 240 65.4
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.5e-86 323.6 248 65.3
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.9e-86 323.2 257 62.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.9e-86 323.2 257 62.3
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 4.2e-86 322.0 238 66.8
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.2e-86 322.0 192 76.6
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.2e-85 320.5 257 61.9
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.6e-85 320.1 256 62.9
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.6e-85 320.1 210 70.0
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 2.1e-85 319.7 242 64.9
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 2.7e-85 319.3 261 60.2
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.7e-85 319.3 195 74.4
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.6e-85 318.9 261 60.5
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 4.7e-85 318.5 263 62.7
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 6.1e-85 318.2 192 75.5
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.0e-84 317.4 253 60.9
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.3e-84 316.2 255 61.6
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 3.0e-84 315.8 267 59.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 4.0e-84 315.5 190 75.8
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 5.2e-84 315.1 261 59.4
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 5.7e-83 311.6 251 64.1
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 9.7e-83 310.8 217 69.1
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.7e-83 310.8 215 71.6
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.7e-82 308.9 197 72.1
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-81 306.2 193 74.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 5.3e-81 305.1 195 73.3
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 9.1e-81 304.3 215 67.9
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.2e-80 303.9 251 62.9
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.7e-80 302.8 259 61.4
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.9e-80 301.6 160 85.6
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 2.9e-79 299.3 195 72.3
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 5.0e-79 298.5 269 59.5
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 8.5e-79 297.7 157 86.6
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.9e-78 296.6 159 83.6
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.6e-77 293.5 203 70.0
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 2.7e-77 292.7 167 78.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.4e-75 285.8 260 59.6
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.8e-74 282.7 223 66.4
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 2.8e-74 282.7 264 57.6
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 3.7e-74 282.3 213 63.8
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 2.9e-71 272.7 264 58.3
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.2e-70 268.9 233 57.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 4.5e-64 248.8 266 44.7
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 7.8e-64 248.1 253 55.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.4e-59 232.6 149 73.2
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 9.2e-57 224.6 196 53.1
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.6e-53 213.8 186 56.5
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 3.4e-51 206.1 129 70.5
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.3e-47 193.4 152 66.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-45 187.6 103 79.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.3e-44 183.3 102 78.4
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.9e-39 166.0 108 66.7
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.9e-35 151.4 141 57.4
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 2.4e-33 146.7 91 72.5
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.7e-32 143.3 94 69.1
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.0e-31 141.4 198 40.4
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.2e-29 134.4 101 63.4
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.3e-23 114.4 195 35.9
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.3e-23 113.6 160 38.8
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.3e-22 109.4 69 78.3
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 1.3e-21 107.8 156 44.9
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 6.2e-21 105.5 202 31.2
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.0e-19 100.5 176 35.2
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.9e-18 95.9 53 84.9
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 7.1e-17 92.0 54 83.3
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 2.1e-16 90.5 133 39.1
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.0e-15 86.7 218 28.4
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 6.7e-15 85.5 120 36.7
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 7.4e-14 82.0 231 28.6
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.1e-12 78.2 131 35.1
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.1e-12 76.6 115 45.2
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.5e-11 74.3 108 42.6
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 1.9e-09 67.4 112 40.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 3.2e-09 66.6 110 36.4
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 9.3e-09 65.1 123 34.1
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.6e-08 64.3 37 78.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.7e-08 63.5 127 37.8
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.0e-08 62.4 96 40.6
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 8.7e-07 58.5 187 28.3
Sopen08g016900 Solanum pennellii HOM05D004917 ORTHO05D005954 8.7e-07 58.5 36 69.4


User provided reference genes

Program Settings