Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.9e-276 954.5 453 100.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 7.4e-248 860.1 453 87.6
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 6.3e-247 857.1 451 88.0
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.4e-246 855.1 451 88.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.4e-243 845.9 448 86.6
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 4.2e-243 844.3 448 86.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.6e-242 842.4 448 85.9
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 4.7e-242 840.9 448 85.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 6.1e-242 840.5 451 85.8
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.4e-241 839.3 451 85.8
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.8e-241 836.6 451 84.9
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-240 836.3 453 85.4
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 2.0e-240 835.5 451 86.0
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.6e-240 835.1 453 85.9
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.6e-240 835.1 453 84.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.3e-240 834.7 451 84.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.3e-239 832.8 450 85.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 6.3e-239 830.5 453 85.2
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.1e-238 829.7 453 85.0
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.1e-238 829.7 451 85.1
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.1e-238 827.8 451 83.8
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 9.1e-238 826.6 440 85.5
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.2e-237 826.2 450 84.0
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.6e-237 825.9 450 83.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 83.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-236 823.2 453 83.2
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 5.0e-236 820.8 452 84.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.5e-235 818.5 451 83.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.5e-235 818.5 450 83.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 2.5e-235 818.5 451 84.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 4.2e-235 817.8 448 84.8
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 7.2e-235 817.0 448 83.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.2e-235 817.0 453 83.7
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 9.4e-235 816.6 433 86.4
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.2e-234 816.2 446 85.0
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.2e-234 816.2 446 85.0
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.2e-234 816.2 451 84.3
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.7e-234 815.1 453 83.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.6e-234 814.7 460 81.7
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 4.7e-234 814.3 445 85.2
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.0e-233 813.1 450 83.6
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-233 812.4 451 83.1
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.8e-233 812.4 451 83.1
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.8e-233 812.4 453 84.1
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 4.0e-233 811.2 451 83.4
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 6.7e-233 810.4 451 82.3
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 8.8e-233 810.1 451 82.5
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.5e-232 809.3 443 84.4
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.3e-232 808.1 445 83.1
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.4e-232 807.7 445 83.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 4.4e-232 807.7 448 83.7
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 7.5e-232 807.0 451 83.8
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.7e-231 805.8 451 81.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.7e-231 805.8 453 83.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.7e-231 805.8 445 84.5
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.1e-230 803.1 451 81.4
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.4e-230 802.7 451 81.4
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.4e-230 802.7 428 85.3
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.4e-230 802.7 445 84.5
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.8e-230 802.4 451 81.4
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.1e-230 801.6 451 81.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 4.1e-230 801.2 451 82.7
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.5e-229 798.1 453 81.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 5.9e-229 797.3 447 82.3
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.9e-229 797.3 451 81.2
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.3e-228 796.2 451 82.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.7e-228 795.8 451 82.0
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.7e-228 795.8 445 81.8
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.2e-228 795.4 445 82.5
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.2e-228 795.4 451 81.8
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.9e-228 795.0 444 82.2
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 5.0e-228 794.3 447 81.9
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 6.5e-228 793.9 451 81.2
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 6.5e-228 793.9 451 80.9
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.5e-228 793.5 451 81.2
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.5e-227 792.0 451 81.8
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.5e-227 790.8 451 80.7
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 7.2e-227 790.4 446 81.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 7.2e-227 790.4 448 81.7
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.6e-226 789.3 482 76.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-226 788.1 451 81.2
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 6.1e-226 787.3 448 81.5
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 8.0e-226 786.9 448 81.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.3e-225 785.4 444 80.6
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 4.0e-225 784.6 451 80.9
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.2e-225 784.3 451 80.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 5.2e-225 784.3 469 78.0
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 5.2e-225 784.3 451 81.2
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 6.8e-225 783.9 447 81.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.2e-224 783.1 444 82.4
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.3e-223 779.6 457 79.4
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-223 779.6 453 81.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.4e-222 776.2 496 74.8
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.8e-222 775.8 451 77.6
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 5.4e-222 774.2 451 79.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.2e-221 773.1 451 78.5
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.6e-221 772.7 451 78.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-221 772.7 451 78.5
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.6e-221 772.7 443 80.8
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 2.0e-221 772.3 451 78.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.0e-221 772.3 451 77.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.7e-221 771.9 449 79.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 4.5e-221 771.2 451 80.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.3e-220 769.6 451 79.6
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 7.2e-219 763.8 444 79.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.8e-214 749.2 412 83.0
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.6e-213 746.1 445 78.7
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.0e-213 745.7 451 77.4
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.5e-203 712.2 447 74.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 4.7e-202 708.0 451 72.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.4e-201 706.4 448 73.9
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.5e-200 703.0 447 75.6
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 4.4e-200 701.4 378 85.7
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 7.8e-197 690.6 388 81.4
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 8.9e-193 677.2 455 71.4
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.4e-190 669.1 377 81.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.8e-189 664.1 462 70.1
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-178 629.8 448 68.8
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.7e-173 612.5 457 67.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.9e-172 608.6 330 86.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.1e-162 574.3 434 65.7
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 4.0e-153 545.4 297 84.8
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 9.0e-153 544.3 453 60.9
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.6e-152 542.7 316 75.9
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.1e-149 533.1 295 83.7
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.4e-145 520.4 288 83.0
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 6.1e-133 478.4 457 56.9
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.2e-130 469.9 379 60.9
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.4e-123 445.7 295 69.8
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-103 380.9 280 66.4
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.8e-84 317.4 194 73.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 6.6e-79 298.9 160 85.0
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 5.1e-71 272.7 153 80.4
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.6e-71 272.3 271 50.9
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 7.6e-67 258.8 140 85.0
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.3e-63 247.3 153 69.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.1e-63 246.1 156 71.8
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.6e-63 245.7 145 73.8
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-62 245.0 147 76.2
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.9e-62 244.2 146 76.0
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 9.6e-62 241.9 195 61.0
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.3e-53 214.9 135 77.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.3e-50 204.9 138 68.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 2.1e-45 187.6 111 80.2
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.7e-39 166.0 116 65.5
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 8.4e-34 149.1 132 56.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.9e-23 113.6 55 90.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.4e-19 100.5 67 70.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-18 98.2 78 62.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.1e-17 95.5 74 62.2
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 2.1e-16 91.3 66 62.1
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-15 89.0 68 61.8
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.4e-15 88.6 73 58.9
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.4e-15 88.6 84 52.4
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 7.4e-14 82.8 67 56.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 4.8e-13 80.1 89 48.3
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.0e-11 74.7 58 56.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.9e-10 70.9 66 50.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 8.5e-10 69.3 49 63.3
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.9e-09 68.2 36 83.3
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.7e-08 64.3 41 70.7
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 6.1e-08 63.2 153 30.1


User provided reference genes

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