Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.5e-31 137.5 63 100.0
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 3.1e-19 97.8 62 74.2
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 4.1e-19 97.4 62 72.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 5.3e-19 97.1 58 79.3
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 9.0e-19 96.3 62 71.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.5e-18 95.5 60 71.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-18 95.5 60 71.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 2.0e-18 95.1 62 67.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.0e-18 95.1 62 72.6
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.6e-18 94.7 62 69.4
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.4e-18 94.4 62 69.4
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.5e-18 94.0 62 71.0
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 4.5e-18 94.0 60 73.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 4.5e-18 94.0 55 72.7
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 5.9e-18 93.6 56 75.0
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 5.9e-18 93.6 55 70.9
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 5.9e-18 93.6 62 67.7
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 7.6e-18 93.2 62 71.0
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.0e-17 92.8 56 69.6
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.0e-17 92.8 55 72.7
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.0e-17 92.8 61 68.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.3e-17 92.4 56 71.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-17 92.4 61 65.6
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.3e-17 92.4 62 69.4
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.7e-17 92.0 62 66.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.7e-17 92.0 56 69.6
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.0e-17 90.5 55 70.9
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 8.5e-17 89.7 61 65.6
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 8.5e-17 89.7 60 71.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.1e-16 89.4 55 69.1
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.1e-16 89.4 56 67.9
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.1e-16 89.4 59 69.5
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.4e-16 89.0 58 65.5
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.4e-16 89.0 53 69.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-16 89.0 55 69.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.9e-16 88.6 62 66.1
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.5e-16 88.2 49 73.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 2.5e-16 88.2 55 65.5
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.5e-16 88.2 56 66.1
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.5e-16 88.2 61 65.6
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 3.2e-16 87.8 48 81.2
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.2e-16 87.4 59 64.4
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.2e-16 87.4 54 75.9
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 5.5e-16 87.0 55 67.3
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 5.5e-16 87.0 56 69.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.5e-16 87.0 62 64.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.5e-16 87.0 55 65.5
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.2e-16 86.7 54 68.5
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 9.3e-16 86.3 62 62.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.3e-16 86.3 55 67.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-15 85.9 53 69.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.2e-15 85.9 62 62.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.2e-15 85.9 56 66.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.2e-15 85.9 49 71.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.2e-15 85.9 49 71.4
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.6e-15 85.5 49 71.4
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.6e-15 85.5 55 63.6
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.1e-15 85.1 49 71.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.1e-15 85.1 53 67.9
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 2.1e-15 85.1 60 65.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.1e-15 85.1 49 71.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.7e-15 84.7 53 69.8
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.7e-15 84.7 49 69.4
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.7e-15 84.7 50 72.0
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.6e-15 84.3 49 69.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 3.6e-15 84.3 49 71.4
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 4.6e-15 84.0 56 66.1
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 4.6e-15 84.0 56 66.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.6e-15 84.0 58 62.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 4.6e-15 84.0 62 62.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.6e-15 84.0 48 72.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 4.6e-15 84.0 49 75.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.1e-15 83.6 55 70.9
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 7.9e-15 83.2 49 71.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.0e-14 82.8 49 69.4
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.0e-14 82.8 52 67.3
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.0e-14 82.8 61 60.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.0e-14 82.8 49 71.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.3e-14 82.4 49 69.4
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-14 82.0 53 67.9
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.8e-14 82.0 52 71.2
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.8e-14 82.0 62 62.9
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-14 81.6 49 69.4
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-14 81.6 49 69.4
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.3e-14 81.6 49 71.4
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.9e-14 80.9 56 58.9
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.9e-14 80.9 47 68.1
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.9e-14 80.9 55 63.6
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 5.1e-14 80.5 55 65.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.1e-14 80.5 48 70.8
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.7e-14 80.1 55 63.6
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 6.7e-14 80.1 49 67.3
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 6.7e-14 80.1 49 67.3
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 6.7e-14 80.1 49 67.3
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 6.7e-14 80.1 49 67.3
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 8.7e-14 79.7 49 69.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 8.7e-14 79.7 55 63.6
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.1e-13 79.3 55 61.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.1e-13 79.3 49 69.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.1e-13 79.3 48 66.7
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.1e-13 79.3 55 61.8
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.5e-13 79.0 49 67.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.5e-13 79.0 55 61.8
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.5e-13 79.0 55 63.6
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.5e-13 79.0 62 61.3
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.5e-13 79.0 61 62.3
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.5e-13 79.0 49 65.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.5e-13 79.0 49 65.3
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.9e-13 78.6 48 72.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.9e-13 78.6 49 69.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.9e-13 78.6 49 61.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.5e-13 78.2 55 61.8
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.5e-13 78.2 55 58.2
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.5e-13 78.2 49 73.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.3e-13 77.8 49 65.3
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.3e-13 77.8 49 65.3
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.3e-13 77.8 55 60.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.3e-13 77.8 55 61.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.7e-13 77.0 52 71.2
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 7.4e-13 76.6 48 68.8
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 9.7e-13 76.3 49 65.3
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 9.7e-13 76.3 51 58.8
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 9.7e-13 76.3 55 58.2
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 9.7e-13 76.3 50 68.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.3e-12 75.9 47 68.1
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-12 75.9 51 60.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-12 75.5 49 65.3
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-12 75.5 49 65.3
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.6e-12 75.5 49 65.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.6e-12 75.5 49 65.3
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.6e-12 75.5 55 58.2
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.2e-12 75.1 49 65.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.8e-12 74.7 55 63.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.8e-12 73.9 44 70.5
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 4.8e-12 73.9 59 61.0
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.4e-11 72.4 55 60.0
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.1e-11 70.9 55 60.0
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.1e-11 70.9 45 71.1
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.1e-11 70.9 55 56.4
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 6.9e-11 70.1 49 63.3
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.2e-10 69.3 51 54.9
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.2e-09 65.1 48 56.2
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.4e-08 62.4 35 74.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 9.4e-08 59.7 55 49.1
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.0e-06 56.2 34 64.7


User provided reference genes

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