Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.2e-119 431.4 222 100.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.9e-47 193.4 223 52.5
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.4e-45 187.2 226 52.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.9e-43 179.5 223 50.7
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.2e-41 174.1 222 49.5
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.7e-40 170.2 222 49.5
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.3e-39 166.0 228 49.6
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 8.1e-38 161.4 227 45.4
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-37 160.6 230 51.3
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.4e-37 160.6 222 49.5
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.8e-37 160.2 227 47.1
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.2e-37 158.7 227 46.3
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.9e-35 152.9 239 50.2
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.7e-35 152.5 224 46.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.7e-35 152.5 225 48.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 6.4e-35 151.8 230 44.3
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 8.3e-35 151.4 224 45.5
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.4e-34 150.6 223 47.1
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.9e-34 150.2 223 46.2
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.4e-34 149.8 230 43.9
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 3.2e-34 149.4 225 44.4
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 4.1e-34 149.1 224 46.4
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.1e-33 146.7 237 46.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 2.7e-33 146.4 230 44.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 6.0e-33 145.2 223 43.0
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 6.0e-33 145.2 223 44.8
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 7.8e-33 144.8 222 42.8
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 7.8e-33 144.8 223 44.8
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.0e-32 144.4 228 43.9
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.3e-32 143.3 225 45.8
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 5.1e-32 142.1 226 44.2
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 5.1e-32 142.1 226 44.7
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 6.6e-32 141.7 228 45.6
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.9e-31 140.2 236 45.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.5e-31 139.8 224 42.4
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.3e-31 139.0 226 44.7
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 4.3e-31 139.0 223 43.5
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 5.6e-31 138.7 226 43.4
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.6e-31 138.7 223 43.5
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 9.5e-31 137.9 224 46.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.6e-30 136.0 224 45.5
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 6.2e-30 135.2 199 47.2
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.2e-30 135.2 224 43.3
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.4e-29 134.0 227 43.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 4.0e-29 132.5 223 41.7
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 6.8e-29 131.7 222 44.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 6.8e-29 131.7 222 44.6
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 6.8e-29 131.7 230 42.2
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-28 130.2 235 42.1
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.0e-28 130.2 222 41.4
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 4.4e-28 129.0 228 43.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.4e-28 129.0 235 41.3
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.4e-28 129.0 235 41.3
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 7.6e-28 128.3 223 43.9
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.3e-27 127.5 197 46.7
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.9e-27 126.3 227 38.8
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 4.9e-27 125.6 226 44.7
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 8.4e-27 124.8 213 41.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.9e-26 123.6 225 44.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.4e-26 123.2 224 41.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 5.4e-26 122.1 224 40.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 5.4e-26 122.1 219 40.2
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 7.1e-26 121.7 176 46.0
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.5e-25 119.4 233 39.9
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.5e-25 119.4 219 39.7
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.0e-24 117.9 228 36.8
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.3e-24 117.5 224 43.3
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.3e-24 117.5 224 43.3
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.7e-24 117.1 222 41.9
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 2.3e-24 116.7 223 39.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.3e-24 116.7 222 40.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.0e-24 116.3 228 42.1
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.0e-24 116.3 228 41.7
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.9e-24 115.9 228 41.7
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.6e-24 114.8 206 40.3
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.1e-23 114.4 231 40.7
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.3e-23 112.5 223 40.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 9.6e-23 111.3 169 46.2
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.2e-22 110.9 227 41.0
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.7e-22 109.0 173 45.1
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 6.2e-22 108.6 224 38.4
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 8.1e-22 108.2 224 38.8
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.1e-21 107.8 250 38.4
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.4e-21 106.7 237 35.0
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.1e-21 106.3 222 37.4
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 4.0e-21 105.9 224 39.7
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.2e-21 105.5 221 36.2
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.9e-21 105.1 221 37.1
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.9e-21 104.8 221 36.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 8.9e-21 104.8 212 36.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.2e-20 104.4 231 40.3
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-20 104.4 223 39.5
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.4e-20 102.4 223 35.9
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.8e-20 102.1 153 47.7
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.8e-20 102.1 222 36.0
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.9e-20 101.3 150 50.7
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 9.9e-20 101.3 248 37.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.2e-19 100.1 224 38.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 3.8e-19 99.4 221 41.2
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.4e-19 98.2 120 50.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.2e-18 95.9 223 37.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 7.1e-18 95.1 228 36.0
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.6e-17 94.0 228 33.8
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.7e-17 93.2 229 38.9
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.8e-17 91.7 146 44.5
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.7e-16 90.5 117 48.7
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.0e-16 89.7 225 36.9
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.9e-16 89.4 225 37.3
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.9e-16 89.4 219 37.0
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 5.1e-16 89.0 73 65.8
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.1e-16 89.0 230 36.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 8.7e-16 88.2 116 46.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.7e-16 88.2 165 41.2
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.5e-15 87.4 227 33.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.9e-15 87.0 225 36.4
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.9e-15 87.0 225 35.1
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 3.3e-15 86.3 121 49.6
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.3e-15 86.3 116 48.3
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.6e-14 84.0 238 32.8
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-14 84.0 127 46.5
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.8e-14 83.2 147 42.9
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.8e-14 83.2 130 46.2
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 3.6e-14 82.8 158 41.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 3.6e-14 82.8 158 41.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 3.6e-14 82.8 158 41.8
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 4.8e-14 82.4 157 41.4
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.8e-14 82.4 157 43.9
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.8e-14 82.4 150 44.7
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 6.2e-14 82.0 157 41.4
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 8.1e-14 81.6 172 41.9
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.1e-13 81.3 116 46.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-13 81.3 206 36.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-13 81.3 116 47.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.1e-13 81.3 157 41.4
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.1e-13 81.3 157 41.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.1e-13 81.3 118 43.2
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.4e-13 80.9 222 33.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-13 80.9 156 40.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-13 80.9 157 42.0
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.4e-13 80.9 156 40.4
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.4e-13 80.9 154 39.6
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-13 80.5 141 39.0
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.3e-13 79.0 229 30.6
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.3e-13 79.0 218 33.0
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 6.9e-13 78.6 222 34.7
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 9.0e-13 78.2 116 44.8
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 9.0e-13 78.2 116 44.8
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 9.0e-13 78.2 116 44.8
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 9.0e-13 78.2 116 44.8
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 3.4e-12 76.3 226 31.4
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 3.4e-12 76.3 246 31.7
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 4.5e-12 75.9 231 34.2
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 5.8e-12 75.5 90 52.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 7.6e-12 75.1 45 77.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.3e-11 74.3 256 33.2
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.4e-11 72.0 127 37.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 8.4e-11 71.6 139 39.6
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-10 71.2 73 57.5
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.4e-10 70.9 48 72.9
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 2.1e-09 67.0 217 31.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.9e-08 62.8 183 32.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.9e-08 62.8 170 32.9
HPP92_018370 Vanilla planifolia HOM05D007665 ORTHO05D008293 3.9e-08 62.8 68 44.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.1e-07 61.2 48 64.6
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 1.5e-07 60.8 251 27.9
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.5e-07 60.1 57 54.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.3e-07 59.3 144 37.5
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 5.6e-07 58.9 216 30.1
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 7.4e-07 58.5 153 31.4
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 7.4e-07 58.5 50 60.0
Atru.chr7.835 Acer truncatum HOM05D007665 ORTHO05D008293 9.6e-07 58.2 191 27.2
MBI19_g16681_MAGBIO Magnolia biondii HOM05D001536 ORTHO05D001442 1.6e-06 57.4 126 31.7
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 1.6e-06 57.4 55 56.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.1e-06 57.0 43 65.1
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.1e-06 57.0 43 65.1
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 2.8e-06 56.6 57 49.1
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 3.6e-06 56.2 245 26.5
Potri.018G090000 Populus trichocarpa HOM05D007665 ORTHO05D008293 4.8e-06 55.8 191 27.7
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 6.2e-06 55.5 102 39.2
Os12g0577800 Oryza sativa ssp. japonica HOM05D001536 ORTHO05D001442 6.2e-06 55.5 139 33.1


User provided reference genes

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