Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 5.3e-158 561.2 336 100.0
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 3.1e-41 173.3 324 44.4
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.4e-38 164.5 342 42.4
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.6e-37 159.5 331 41.7
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.9e-36 156.4 322 42.2
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.2e-32 144.8 307 42.3
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 3.4e-32 143.3 304 38.5
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 3.4e-32 143.3 306 42.5
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.5e-32 142.9 327 38.5
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.5e-30 137.1 366 35.2
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 9.4e-30 135.2 341 42.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 2.1e-29 134.0 361 37.7
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 3.6e-29 133.3 320 38.8
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.3e-28 130.6 344 40.1
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.3e-28 130.6 331 38.7
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.5e-27 127.9 352 38.1
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 1.5e-27 127.9 267 42.3
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 4.3e-27 126.3 381 36.2
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 9.7e-27 125.2 376 35.4
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-26 124.8 328 37.8
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 8.2e-26 122.1 323 41.2
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.1e-25 121.7 362 39.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.4e-25 121.3 379 33.2
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 6.9e-25 119.0 329 38.0
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.1e-25 118.6 329 34.0
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 1.2e-24 118.2 376 42.0
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.0e-24 117.5 378 42.3
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.4e-24 116.7 332 38.3
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.5e-24 116.3 355 39.4
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 4.5e-24 116.3 353 32.9
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.9e-24 115.9 332 38.0
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.7e-24 115.5 354 37.9
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.0e-23 115.2 380 36.1
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.0e-23 115.2 325 36.0
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-23 114.8 352 33.0
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.8e-23 113.2 312 32.7
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 6.5e-23 112.5 296 47.0
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.5e-23 112.5 355 38.3
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 6.5e-23 112.5 345 37.7
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 8.5e-23 112.1 171 47.4
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.2e-22 110.2 347 34.0
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 3.2e-22 110.2 318 37.4
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.2e-22 109.8 349 33.5
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 5.5e-22 109.4 311 33.8
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 7.2e-22 109.0 329 36.5
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 7.2e-22 109.0 319 34.5
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 9.4e-22 108.6 330 40.6
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.7e-21 107.1 355 38.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 6.1e-21 105.9 322 36.6
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 3.0e-20 103.6 328 36.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 3.9e-20 103.2 323 36.5
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 8.8e-20 102.1 357 31.7
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.1e-19 101.7 336 33.9
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.5e-19 101.3 380 36.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.5e-19 101.3 308 35.4
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.0e-19 100.9 344 32.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.0e-19 100.9 370 34.3
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 2.6e-19 100.5 322 28.3
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.6e-19 100.5 338 35.5
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.3e-19 100.1 344 30.5
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 9.7e-19 98.6 324 38.0
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.8e-18 97.1 277 37.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.7e-18 96.7 320 31.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 4.8e-18 96.3 342 34.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 6.3e-18 95.9 311 36.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 6.3e-18 95.9 311 36.3
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 8.2e-18 95.5 193 47.7
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.8e-17 94.4 303 41.6
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.1e-17 93.6 332 38.0
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 4.1e-17 93.2 346 34.7
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 7.0e-17 92.4 317 40.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.2e-16 91.7 323 31.0
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 3.5e-16 90.1 323 30.0
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 4.5e-16 89.7 368 29.9
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.5e-16 89.7 363 33.3
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.5e-16 89.7 216 50.5
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.0e-15 88.6 352 29.8
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.3e-15 88.2 364 33.8
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.3e-15 88.2 364 33.8
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 2.2e-15 87.4 344 39.2
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.8e-15 86.7 364 33.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 5.0e-15 86.3 322 35.1
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.5e-15 85.9 346 31.8
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 8.5e-15 85.5 306 35.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.9e-14 84.3 324 32.4
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.9e-14 84.3 376 36.7
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.5e-14 84.0 315 29.8
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.5e-14 84.0 315 29.8
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.2e-14 83.6 313 29.7
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 5.5e-14 82.8 275 30.2
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 7.2e-14 82.4 263 39.2
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.4e-14 82.0 243 32.1
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 9.4e-14 82.0 237 30.8
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.2e-13 81.6 322 38.8
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.1e-13 80.9 324 31.2
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.1e-13 80.9 237 33.3
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.7e-13 80.5 193 34.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.7e-13 79.7 324 29.6
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.4e-12 78.2 329 31.3
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 2.3e-12 77.4 193 34.2
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 3.0e-12 77.0 328 29.6
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 6.7e-12 75.9 250 31.2
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 6.7e-12 75.9 306 31.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.1e-11 75.1 301 31.6
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.1e-11 75.1 280 31.4
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 2.6e-11 73.9 309 28.2
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.6e-11 73.9 74 58.1
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 3.3e-11 73.6 174 35.1
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.4e-11 73.2 366 30.3
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.4e-11 73.2 198 35.4
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 9.7e-11 72.0 178 35.4
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 2.2e-10 70.9 330 27.9
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.8e-10 70.5 196 34.7
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 2.8e-10 70.5 305 29.2
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 2.8e-10 70.5 300 29.0
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 4.8e-10 69.7 323 28.5
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.1e-09 68.6 177 34.5
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.1e-09 68.6 177 34.5
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.1e-09 68.6 191 35.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.1e-09 68.6 357 30.3
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.8e-09 67.8 193 33.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.4e-09 67.4 192 34.9
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 4.1e-09 66.6 374 29.1
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.6e-08 64.7 321 36.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 4.5e-08 63.2 306 31.4
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 7.7e-08 62.4 257 25.7
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 7.7e-08 62.4 327 28.7
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 1.0e-07 62.0 98 40.8
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 3.8e-07 60.1 327 27.2
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 3.8e-07 60.1 311 26.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.8e-07 60.1 314 27.7
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 5.5e-06 56.2 305 33.1


User provided reference genes

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