Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 5.2e-51 204.1 106 100.0
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 1.7e-22 109.4 102 68.6
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.3e-22 109.0 96 68.8
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.0e-22 108.6 96 69.8
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.0e-22 108.6 96 69.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.4e-19 99.8 106 59.4
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 5.2e-19 97.8 100 60.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 8.9e-19 97.1 108 59.3
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.2e-18 96.7 101 59.4
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 1.5e-18 96.3 96 64.6
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.5e-18 96.3 101 58.4
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.4e-18 95.1 101 57.4
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.7e-17 92.8 101 56.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.7e-17 92.8 107 62.6
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 1.7e-17 92.8 107 58.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 2.9e-17 92.0 106 57.5
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 4.9e-17 91.3 92 60.9
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 8.3e-17 90.5 100 58.0
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 8.3e-17 90.5 108 56.5
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.1e-16 90.1 101 56.4
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.1e-16 90.1 108 60.2
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.1e-16 90.1 96 60.4
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.4e-16 89.0 100 62.0
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 3.2e-16 88.6 109 58.7
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 4.1e-16 88.2 107 56.1
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 4.1e-16 88.2 117 52.1
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 5.4e-16 87.8 107 55.1
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 7.1e-16 87.4 106 54.7
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 9.2e-16 87.0 103 57.3
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.2e-15 86.7 109 58.7
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.6e-15 86.3 106 56.6
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.6e-15 86.3 97 56.7
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.6e-15 86.3 98 59.2
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.1e-15 85.9 95 55.8
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.7e-15 85.5 108 56.5
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.7e-15 85.5 96 58.3
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 3.5e-15 85.1 107 56.1
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.5e-15 85.1 97 57.7
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 3.5e-15 85.1 97 56.7
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 6.0e-15 84.3 97 57.7
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 6.0e-15 84.3 95 53.7
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 7.8e-15 84.0 96 58.3
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 7.8e-15 84.0 96 56.2
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.0e-14 83.6 109 55.0
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.0e-14 83.6 93 57.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.0e-14 83.6 108 53.7
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.3e-14 83.2 107 52.3
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.3e-14 83.2 96 55.2
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.7e-14 82.8 108 54.6
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.0e-14 82.0 107 56.1
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 3.0e-14 82.0 95 61.1
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 3.0e-14 82.0 97 56.7
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 3.0e-14 82.0 95 52.6
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 3.9e-14 81.6 108 54.6
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.1e-14 81.3 95 57.9
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 5.1e-14 81.3 96 57.3
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 5.1e-14 81.3 98 56.1
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 5.1e-14 81.3 106 54.7
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.6e-14 80.9 86 64.0
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.6e-14 80.9 86 64.0
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 8.6e-14 80.5 91 57.1
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.6e-14 80.5 97 58.8
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-13 80.1 96 56.2
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-13 80.1 96 56.2
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.1e-13 80.1 110 54.5
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 1.5e-13 79.7 98 60.2
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.5e-13 79.7 98 56.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.5e-13 79.7 97 59.8
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.9e-13 79.3 106 50.9
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.9e-13 79.3 96 56.2
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 1.9e-13 79.3 99 56.6
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 2.5e-13 79.0 98 56.1
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.5e-13 79.0 107 52.3
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 3.3e-13 78.6 94 51.1
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.3e-13 78.6 109 51.4
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.3e-13 78.2 98 55.1
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 5.6e-13 77.8 98 53.1
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 5.6e-13 77.8 97 55.7
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.3e-13 77.4 97 59.8
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 9.5e-13 77.0 95 53.7
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 9.5e-13 77.0 106 51.9
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.2e-12 76.6 95 54.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.2e-12 76.6 107 49.5
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.6e-12 76.3 107 52.3
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.6e-12 76.3 97 59.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.6e-12 76.3 93 55.9
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 2.1e-12 75.9 99 48.5
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.1e-12 75.9 107 51.4
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.1e-12 75.9 98 59.2
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 2.1e-12 75.9 91 54.9
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 2.8e-12 75.5 109 50.5
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.8e-12 75.5 97 53.6
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 3.6e-12 75.1 96 53.1
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.6e-12 75.1 98 52.0
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 6.2e-12 74.3 109 56.0
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 6.2e-12 74.3 109 50.5
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 6.2e-12 74.3 98 51.0
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 6.2e-12 74.3 109 50.5
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 6.2e-12 74.3 108 51.9
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 8.1e-12 73.9 107 51.4
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 8.1e-12 73.9 96 53.1
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 8.1e-12 73.9 97 53.6
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 1.1e-11 73.6 98 51.0
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.4e-11 73.2 107 51.4
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.4e-11 73.2 91 59.3
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.4e-11 73.2 102 52.9
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.1e-11 72.0 106 47.2
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.1e-11 72.0 96 53.1
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 3.1e-11 72.0 91 56.0
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 4.0e-11 71.6 110 47.3
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 4.0e-11 71.6 110 47.3
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 4.0e-11 71.6 104 50.0
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 5.2e-11 71.2 91 54.9
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 5.2e-11 71.2 106 51.9
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 6.8e-11 70.9 98 57.1
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 6.8e-11 70.9 96 50.0
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 8.9e-11 70.5 106 46.2
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 8.9e-11 70.5 104 49.0
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 1.2e-10 70.1 97 47.4
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.2e-10 70.1 105 48.6
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.5e-10 69.7 100 52.0
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 1.5e-10 69.7 95 48.4
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.5e-10 69.7 97 51.5
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 2.0e-10 69.3 96 47.9
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 2.0e-10 69.3 96 54.2
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 2.0e-10 69.3 84 52.4
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.6e-10 68.9 97 50.5
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 2.6e-10 68.9 97 54.6
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 3.4e-10 68.6 96 46.9
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 3.4e-10 68.6 92 53.3
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 5.8e-10 67.8 96 49.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 7.6e-10 67.4 102 51.0
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 9.9e-10 67.0 97 49.5
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 9.9e-10 67.0 84 56.0
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 9.9e-10 67.0 96 49.0
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 1.7e-09 66.2 87 52.9
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.9e-09 65.5 109 48.6
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.9e-09 65.5 102 50.0
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.9e-09 65.5 99 50.5
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 2.9e-09 65.5 91 50.5
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 3.8e-09 65.1 110 48.2
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 3.8e-09 65.1 110 48.2
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 3.8e-09 65.1 110 48.2
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 3.8e-09 65.1 44 68.2
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 4.9e-09 64.7 91 52.7
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 6.4e-09 64.3 97 54.6
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 6.4e-09 64.3 103 47.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.1e-08 63.5 109 47.7
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-08 63.5 102 49.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-08 63.5 102 50.0
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.4e-08 63.2 98 48.0
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.4e-08 63.2 100 52.0
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.9e-08 62.8 108 50.9
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.4e-08 62.4 109 47.7
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 2.4e-08 62.4 92 52.2
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.2e-08 62.0 98 49.0
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.2e-08 62.0 109 47.7
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 7.1e-08 60.8 104 47.1
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 9.2e-08 60.5 52 61.5
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 9.2e-08 60.5 98 46.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.6e-07 59.7 104 46.2
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.1e-07 59.3 95 41.1
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 2.1e-07 59.3 97 48.5
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.5e-07 58.5 108 44.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-07 58.5 104 45.2
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-07 58.5 104 45.2
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 4.6e-07 58.2 100 47.0
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 6.0e-07 57.8 108 44.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.0e-07 57.8 102 43.1
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 7.8e-07 57.4 108 42.6
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 7.8e-07 57.4 108 42.6
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 7.8e-07 57.4 91 51.6
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.8e-07 57.4 92 47.8
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.0e-06 57.0 49 57.1
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 2.3e-06 55.8 96 40.6
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.0e-06 55.5 41 65.9
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 3.0e-06 55.5 42 64.3
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 5.1e-06 54.7 108 43.5
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 5.1e-06 54.7 96 44.8
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 8.6e-06 53.9 98 44.9
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 8.6e-06 53.9 99 44.4
Mapoly0053s0018 Marchantia polymorpha HOM05D062226 ORTHO05D257028 8.6e-06 53.9 70 48.6


User provided reference genes

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