Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06330 Coffea canephora HOM05D004633 ORTHO05D005503 2.2e-44 181.8 86 100.0
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 4.2e-35 151.0 72 98.6
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 6.5e-28 127.1 72 77.8
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 5.5e-27 124.0 72 73.6
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 7.2e-27 123.6 71 74.6
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 9.4e-27 123.2 71 74.6
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.2e-26 122.9 72 75.0
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 1.6e-26 122.5 71 73.2
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 2.7e-26 121.7 74 75.7
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 6.1e-26 120.6 71 73.2
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 6.1e-26 120.6 74 75.7
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 1.0e-25 119.8 71 74.6
Cpa.g.sc55.108 Carica papaya HOM05D004633 ORTHO05D005503 1.4e-25 119.4 72 70.8
Nitab4.5_0007370g0010 Nicotiana tabacum HOM05D004633 ORTHO05D005503 1.8e-25 119.0 72 70.8
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 2.3e-25 118.6 76 72.4
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 8.8e-25 116.7 71 69.0
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 8.8e-25 116.7 72 70.8
Lj7A74G30 Lonicera japonica HOM05D004633 ORTHO05D005503 1.5e-24 115.9 72 73.6
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 1.5e-24 115.9 72 73.6
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 2.0e-24 115.5 67 70.1
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 2.0e-24 115.5 67 70.1
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 2.0e-24 115.5 68 72.1
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 2.6e-24 115.2 61 78.7
Nitab4.5_0003962g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 2.6e-24 115.2 68 73.5
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 2.6e-24 115.2 68 70.6
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 4.4e-24 114.4 68 72.1
CAN.G82.15 Capsicum annuum HOM05D004633 ORTHO05D005503 4.4e-24 114.4 72 70.8
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 5.7e-24 114.0 72 66.7
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 7.5e-24 113.6 59 81.4
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 7.5e-24 113.6 72 66.7
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 9.7e-24 113.2 67 68.7
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 9.7e-24 113.2 67 76.1
SalBow5G0679 Salvia bowleyana HOM05D004633 ORTHO05D005503 1.3e-23 112.8 67 71.6
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 1.3e-23 112.8 68 70.6
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 1.7e-23 112.5 68 70.6
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 1.7e-23 112.5 72 68.1
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 1.7e-23 112.5 72 65.3
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 1.7e-23 112.5 70 72.9
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 2.2e-23 112.1 66 74.2
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 2.2e-23 112.1 72 70.8
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 2.8e-23 111.7 68 72.1
MD02G1177300 Malus domestica HOM05D004633 ORTHO05D005503 2.8e-23 111.7 67 68.7
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 3.7e-23 111.3 67 73.1
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 3.7e-23 111.3 70 70.0
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 4.8e-23 110.9 70 67.1
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 4.8e-23 110.9 67 73.1
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 4.8e-23 110.9 67 73.1
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 8.3e-23 110.2 59 79.7
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 8.3e-23 110.2 70 65.7
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.3e-23 110.2 70 65.7
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 1.1e-22 109.8 66 69.7
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 1.4e-22 109.4 65 73.8
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 1.8e-22 109.0 59 78.0
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 1.8e-22 109.0 72 66.7
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 1.8e-22 109.0 62 75.8
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 1.8e-22 109.0 70 67.1
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 2.4e-22 108.6 59 79.7
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 3.1e-22 108.2 68 70.6
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 4.1e-22 107.8 70 64.3
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 4.1e-22 107.8 70 65.7
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 4.1e-22 107.8 67 73.1
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 4.1e-22 107.8 65 72.3
CDE02G4202 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 5.3e-22 107.5 69 66.7
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 9.1e-22 106.7 70 67.1
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 1.2e-21 106.3 70 62.9
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 1.6e-21 105.9 66 65.2
DCAR_010864 Daucus carota HOM05D004633 ORTHO05D005503 1.6e-21 105.9 57 75.4
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 2.0e-21 105.5 70 65.7
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 2.7e-21 105.1 59 76.3
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 2.7e-21 105.1 70 64.3
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 3.5e-21 104.8 62 71.0
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 3.5e-21 104.8 62 71.0
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 3.5e-21 104.8 59 74.6
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 3.5e-21 104.8 62 71.0
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 7.7e-21 103.6 59 72.9
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 1.0e-20 103.2 58 75.9
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 1.0e-20 103.2 58 75.9
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 1.3e-20 102.8 62 72.6
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 1.3e-20 102.8 67 59.7
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 1.7e-20 102.4 70 61.4
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 1.7e-20 102.4 70 61.4
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 1.7e-20 102.4 59 76.3
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.7e-20 102.4 64 67.2
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 2.9e-20 101.7 65 69.2
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 3.8e-20 101.3 54 81.5
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 3.8e-20 101.3 67 65.7
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 5.0e-20 100.9 69 68.1
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 8.5e-20 100.1 49 87.8
Sc03g0001790 Simmondsia chinensis HOM05D004633 ORTHO05D005503 8.5e-20 100.1 67 62.7
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 1.1e-19 99.8 57 75.4
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 1.1e-19 99.8 65 64.6
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 1.5e-19 99.4 57 73.7
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 1.9e-19 99.0 57 73.7
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 2.5e-19 98.6 58 74.1
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 3.2e-19 98.2 57 73.7
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 4.2e-19 97.8 55 76.4
PGSC0003DMG400027934 Solanum tuberosum HOM05D004633 ORTHO05D005503 4.2e-19 97.8 71 60.6
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 5.5e-19 97.4 62 62.9
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 9.4e-19 96.7 57 71.9
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 1.2e-18 96.3 62 69.4
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 2.7e-18 95.1 62 61.3
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 2.7e-18 95.1 70 54.3
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 1.0e-17 93.2 57 66.7
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 4.0e-17 91.3 63 61.9
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 4.0e-17 91.3 57 64.9
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 1.7e-15 85.9 55 63.6
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 1.7e-15 85.9 55 63.6
TPR.G20812 Trifolium pratense HOM05D004633 ORTHO05D005503 2.8e-15 85.1 57 61.4
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 4.1e-14 81.3 56 58.9
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 2.0e-13 79.0 59 54.2
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 2.6e-08 62.0 70 41.4
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 1.7e-07 59.3 46 54.3


User provided reference genes

Program Settings