Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g06310 Coffea canephora HOM05D000018 ORTHO05D005005 1.1e-67 259.6 117 100.0
Cc07_g06270 Coffea canephora HOM05D000018 ORTHO05D005005 1.4e-28 129.8 68 89.7
MSTRG.23724 Avicennia marina HOM05D000018 ORTHO05D005005 2.6e-27 125.6 66 83.3
CAN.G370.30 Capsicum annuum HOM05D000018 ORTHO05D005005 2.6e-27 125.6 66 83.3
Hma1.2p1_0017F.1_g011770 Hydrangea macrophylla HOM05D000018 ORTHO05D005005 9.8e-27 123.6 65 81.5
Solyc02g093080.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 9.8e-27 123.6 66 80.3
Sopen02g037650 Solanum pennellii HOM05D000018 ORTHO05D005005 9.8e-27 123.6 66 80.3
PGSC0003DMG401024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 1.3e-26 123.2 66 80.3
Oeu014804.1 Olea europaea HOM05D000018 ORTHO05D005005 1.7e-26 122.9 66 83.3
SGA_v2.0_scaffold15G07351 Striga asiatica HOM05D000018 ORTHO05D005005 1.7e-26 122.9 66 80.3
Nitab4.5_0000929g0050 Nicotiana tabacum HOM05D000018 ORTHO05D005005 2.2e-26 122.5 66 80.3
Nitab4.5_0001603g0090 Nicotiana tabacum HOM05D000018 ORTHO05D005005 2.2e-26 122.5 66 80.3
Peaxi162Scf00549g00224 Petunia axillaris HOM05D000018 ORTHO05D005005 2.9e-26 122.1 65 81.5
Solyc02g093070.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 8.3e-26 120.6 66 77.3
Sopen02g037640 Solanum pennellii HOM05D000018 ORTHO05D005005 1.1e-25 120.2 66 75.8
Dinv30021 Davidia involucrata HOM05D000018 ORTHO05D005005 4.1e-25 118.2 62 82.3
Migut.H00408 Erythranthe guttata HOM05D000018 ORTHO05D005005 4.1e-25 118.2 66 78.8
Gohir.D10G097000 Gossypium hirsutum HOM05D000018 ORTHO05D005005 5.4e-25 117.9 66 75.8
Rhsim08G0098500 Rhododendron simsii HOM05D000018 ORTHO05D005005 7.0e-25 117.5 66 78.8
Actinidia03802 Actinidia chinensis HOM05D000018 ORTHO05D005005 9.2e-25 117.1 66 78.8
PGSC0003DMG402024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 9.2e-25 117.1 66 74.2
Gorai.011G106500 Gossypium raimondii HOM05D000018 ORTHO05D005005 3.5e-24 115.2 101 54.5
Cpa.g.sc55.109 Carica papaya HOM05D000018 ORTHO05D005005 6.0e-24 114.4 66 75.8
GSVIVG01022069001 Vitis vinifera HOM05D000018 ORTHO05D005005 6.0e-24 114.4 66 75.8
Atru.chr3.270 Acer truncatum HOM05D000018 ORTHO05D005005 7.8e-24 114.0 66 75.8
Gohir.A10G091100 Gossypium hirsutum HOM05D000018 ORTHO05D005005 7.8e-24 114.0 66 72.7
vmacro17965 Vaccinium macrocarpon HOM05D000018 ORTHO05D005005 7.8e-24 114.0 66 75.8
SalBow1G4046 Salvia bowleyana HOM05D000018 ORTHO05D005005 1.3e-23 113.2 66 72.7
PGR004G0264 Punica granatum HOM05D000018 ORTHO05D005005 2.3e-23 112.5 66 71.2
FAN26G0536 Fragaria x ananassa HOM05D000018 ORTHO05D005005 3.0e-23 112.1 68 72.1
Nitab4.5_0003829g0030 Nicotiana tabacum HOM05D000018 ORTHO05D005005 3.0e-23 112.1 66 72.7
Eucgr.I00887 Eucalyptus grandis HOM05D000018 ORTHO05D005005 8.6e-23 110.5 66 71.2
unitig_736.g22392 Utricularia gibba HOM05D000018 ORTHO05D005005 8.6e-23 110.5 66 69.7
FvH4_1g16460 Fragaria vesca HOM05D000018 ORTHO05D005005 1.1e-22 110.2 66 71.2
Lsat_1_v5_gn_3_90240 Lactuca sativa HOM05D000018 ORTHO05D005005 1.1e-22 110.2 69 73.9
Nitab4.5_0000070g0220 Nicotiana tabacum HOM05D000018 ORTHO05D005005 1.5e-22 109.8 66 71.2
Thecc.01G061600 Theobroma cacao HOM05D000018 ORTHO05D005005 1.9e-22 109.4 66 69.7
Thecc.01G061500 Theobroma cacao HOM05D000018 ORTHO05D005005 3.3e-22 108.6 66 69.7
HanXRQChr15g0473621 Helianthus annuus HOM05D000018 ORTHO05D005005 4.3e-22 108.2 68 70.6
RcHm_v2.0_Chr2g0106341 Rosa chinensis HOM05D000018 ORTHO05D005005 4.3e-22 108.2 66 69.7
Ciclev10026055m.g Citrus clementina HOM05D000018 ORTHO05D005005 5.6e-22 107.8 66 71.2
Eucgr.I00885 Eucalyptus grandis HOM05D000018 ORTHO05D005005 7.3e-22 107.5 95 49.5
ECA246G3867 Erigeron canadensis HOM05D000018 ORTHO05D005005 1.2e-21 106.7 68 67.6
Sabra07G0042000 Salix brachista HOM05D000018 ORTHO05D005005 1.2e-21 106.7 66 66.7
Haze_15365 Corylus avellana HOM05D000018 ORTHO05D005005 1.6e-21 106.3 65 69.2
Prupe.6G230800 Prunus persica HOM05D000018 ORTHO05D005005 1.6e-21 106.3 68 67.6
Manes.13G119900 Manihot esculenta HOM05D000018 ORTHO05D005005 2.1e-21 105.9 66 69.7
TAR381G1021 Trochodendron aralioides HOM05D000018 ORTHO05D005005 3.6e-21 105.1 65 70.8
Aqoxy5G01174 Aquilegia oxysepala HOM05D000018 ORTHO05D005005 4.7e-21 104.8 66 68.2
CiPaw.01G014500 Carya illinoinensis HOM05D000018 ORTHO05D005005 4.7e-21 104.8 65 67.7
MD02G1177200 Malus domestica HOM05D000018 ORTHO05D005005 4.7e-21 104.8 65 67.7
PSO210G4274 Papaver somniferum HOM05D000018 ORTHO05D005005 6.2e-21 104.4 66 69.7
Potri.007G047100 Populus trichocarpa HOM05D000018 ORTHO05D005005 6.2e-21 104.4 66 65.2
Gorai.003G026400 Gossypium raimondii HOM05D000018 ORTHO05D005005 1.1e-20 103.6 65 66.2
PSO170G4200 Papaver somniferum HOM05D000018 ORTHO05D005005 1.1e-20 103.6 66 68.2
AL5G30340 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 1.4e-20 103.2 98 52.0
QL06p040443 Quercus lobata HOM05D000018 ORTHO05D005005 1.4e-20 103.2 65 66.2
ClCG02G008010 Citrullus lanatus HOM05D000018 ORTHO05D005005 1.8e-20 102.8 66 68.2
MELO3C024783.2 Cucumis melo HOM05D000018 ORTHO05D005005 1.8e-20 102.8 66 68.2
CsaV3_2G035650 Cucumis sativus L. HOM05D000018 ORTHO05D005005 1.8e-20 102.8 66 68.2
Sed0024839 Sechium edule HOM05D000018 ORTHO05D005005 4.0e-20 101.7 66 66.7
TWI09G0523 Tripterygium wilfordii HOM05D000018 ORTHO05D005005 4.0e-20 101.7 67 65.7
ATR0724G007 Amborella trichopoda HOM05D000018 ORTHO05D005005 5.2e-20 101.3 65 64.6
arahy.Tifrunner.gnm1.ann1.2NJ3DY Arachis hypogaea HOM05D000018 ORTHO05D005005 5.2e-20 101.3 66 66.7
arahy.Tifrunner.gnm1.ann1.S9I11U Arachis hypogaea HOM05D000018 ORTHO05D005005 6.8e-20 100.9 66 66.7
AT3G50210 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 8.9e-20 100.5 98 52.0
BcaB01g00633 Brassica carinata HOM05D000018 ORTHO05D005005 1.5e-19 99.8 98 51.0
Gohir.A02G155800 Gossypium hirsutum HOM05D000018 ORTHO05D005005 1.5e-19 99.8 65 64.6
Nn5g30378 Nelumbo nucifera HOM05D000018 ORTHO05D005005 2.0e-19 99.4 66 66.7
QL06p040449 Quercus lobata HOM05D000018 ORTHO05D005005 2.0e-19 99.4 66 65.2
Thhalv10010533m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 2.6e-19 99.0 98 53.1
THA.LOC104821246 Tarenaya hassleriana HOM05D000018 ORTHO05D005005 2.6e-19 99.0 65 67.7
A09p43270 Brassica napus HOM05D000018 ORTHO05D005005 3.4e-19 98.6 98 51.0
BraA09t39797Z Brassica rapa HOM05D000018 ORTHO05D005005 3.4e-19 98.6 98 51.0
Ca_22132_v3 Cicer arietinum L. HOM05D000018 ORTHO05D005005 3.4e-19 98.6 67 67.2
CANSAT25G0456 Cannabis sativa HOM05D000018 ORTHO05D005005 4.4e-19 98.2 69 66.7
CANSAT25G2708 Cannabis sativa HOM05D000018 ORTHO05D005005 4.4e-19 98.2 69 66.7
BcaC07g39481 Brassica carinata HOM05D000018 ORTHO05D005005 5.8e-19 97.8 98 50.0
C08p25260 Brassica napus HOM05D000018 ORTHO05D005005 5.8e-19 97.8 98 50.0
BolC8t50148H Brassica oleracea HOM05D000018 ORTHO05D005005 5.8e-19 97.8 98 50.0
Carub.0005s1653 Capsella rubella HOM05D000018 ORTHO05D005005 5.8e-19 97.8 69 66.7
CARHR159540 Cardamine hirsuta HOM05D000018 ORTHO05D005005 5.8e-19 97.8 98 51.0
Lalb_Chr05g0226231 Lupinus albus HOM05D000018 ORTHO05D005005 5.8e-19 97.8 66 65.2
Os09g0245500 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D005005 5.8e-19 97.8 66 60.6
CDE02G2246 Ceratophyllum demersum HOM05D000018 ORTHO05D005005 7.5e-19 97.4 66 62.1
EL10Ac6g15706 Beta vulgaris HOM05D000018 ORTHO05D005005 1.3e-18 96.7 59 69.5
Psat4g085080 Pisum sativum HOM05D000018 ORTHO05D005005 2.9e-18 95.5 66 65.2
Sp5g11950 Schrenkiella parvula HOM05D000018 ORTHO05D005005 2.9e-18 95.5 69 63.8
COL.COLO4_11462 Corchorus olitorius HOM05D000018 ORTHO05D005005 3.7e-18 95.1 62 62.9
Zm00001eb226150 Zea mays HOM05D000018 ORTHO05D005005 4.9e-18 94.7 66 59.1
AUR62003920 Chenopodium quinoa HOM05D000018 ORTHO05D005005 6.4e-18 94.4 58 69.0
Thecc.01G061400 Theobroma cacao HOM05D000018 ORTHO05D005005 1.1e-17 93.6 66 63.6
MBI16_g26807_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D005005 1.4e-17 93.2 66 59.1
HPP92_015821 Vanilla planifolia HOM05D000018 ORTHO05D005005 1.9e-17 92.8 65 61.5
CANSAT25G3128 Cannabis sativa HOM05D000018 ORTHO05D005005 2.4e-17 92.4 74 60.8
CANSAT25G3356 Cannabis sativa HOM05D000018 ORTHO05D005005 2.4e-17 92.4 74 60.8
VMungo0251G1013 Vigna mungo HOM05D000018 ORTHO05D005005 3.2e-17 92.0 66 60.6
Lj4g0011269 Lotus japonicus HOM05D000018 ORTHO05D005005 4.1e-17 91.7 66 62.1
CAN.G225.15 Capsicum annuum HOM05D000070 ORTHO05D005005 7.0e-17 90.9 61 67.2
Atru.chr3.273 Acer truncatum HOM05D000018 ORTHO05D005005 1.2e-16 90.1 65 58.5
Glyma.17G169100 Glycine max HOM05D000018 ORTHO05D005005 1.6e-16 89.7 66 59.1
BcaB01g00689 Brassica carinata HOM05D000018 ORTHO05D005005 1.0e-15 87.0 68 55.9
Phvul.003G241200 Phaseolus vulgaris HOM05D000018 ORTHO05D005005 1.0e-15 87.0 66 56.1
Aa31LG4G18500 Aethionema arabicum HOM05D000018 ORTHO05D005005 1.7e-15 86.3 69 58.0
A06p18070 Brassica napus HOM05D000018 ORTHO05D005005 3.0e-15 85.5 68 57.4
BraA06t24897Z Brassica rapa HOM05D000018 ORTHO05D005005 3.0e-15 85.5 68 57.4
BcaC07g39426 Brassica carinata HOM05D000018 ORTHO05D005005 5.1e-15 84.7 68 54.4
C08p24650 Brassica napus HOM05D000018 ORTHO05D005005 5.1e-15 84.7 68 54.4
BolC8t50080H Brassica oleracea HOM05D000018 ORTHO05D005005 5.1e-15 84.7 68 54.4
CARHR158660 Cardamine hirsuta HOM05D000018 ORTHO05D005005 8.6e-15 84.0 70 60.0
Mapoly0011s0097 Marchantia polymorpha HOM05D000018 ORTHO05D005005 1.1e-14 83.6 64 54.7
AT3G49630 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 2.5e-14 82.4 68 55.9
AL5G29480 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 4.3e-14 81.6 68 55.9
BcaB05g23136 Brassica carinata HOM05D000018 ORTHO05D005005 9.5e-14 80.5 97 42.3
A01p24610 Brassica napus HOM05D000018 ORTHO05D005005 9.5e-14 80.5 68 55.9
BraA01t02372Z Brassica rapa HOM05D000018 ORTHO05D005005 9.5e-14 80.5 68 55.9
AagrBONN_evm.TU.Sc2ySwM_117.288 Anthoceros agrestis HOM05D000018 ORTHO05D005005 1.2e-13 80.1 65 55.4
AUR62038234 Chenopodium quinoa HOM05D000018 ORTHO05D005005 1.2e-13 80.1 61 55.7
Thhalv10010531m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 1.6e-13 79.7 68 57.4
Sp5g12480 Schrenkiella parvula HOM05D000018 ORTHO05D005005 1.6e-13 79.7 69 53.6
SEGI_14288 Sequoiadendron giganteum HOM05D000018 ORTHO05D005005 1.6e-13 79.7 65 52.3
CARHR158650 Cardamine hirsuta HOM05D000018 ORTHO05D005005 2.1e-13 79.3 69 52.2
AL8G22460 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 6.2e-13 77.8 68 52.9
AT3G49620 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 6.2e-13 77.8 68 52.9
Pp3c21_1290 Physcomitrium patens HOM05D000018 ORTHO05D005005 2.3e-12 75.9 66 51.5
Carub.0005s1595 Capsella rubella HOM05D000018 ORTHO05D005005 4.0e-12 75.1 70 52.9
Carub.0005s1596 Capsella rubella HOM05D000018 ORTHO05D005005 6.8e-12 74.3 67 53.7
Duzib147G1136 Durio zibethinus HOM05D000018 ORTHO05D005005 2.6e-11 72.4 42 69.0
SMO347G0618 Selaginella moellendorffii HOM05D000018 ORTHO05D005005 2.6e-11 72.4 66 51.5
Atru.chr3.269 Acer truncatum HOM05D000018 ORTHO05D005005 3.4e-11 72.0 59 54.2
Zm00001eb418230 Zea mays HOM05D000018 ORTHO05D005005 3.4e-11 72.0 90 36.7
Nitab4.5_0000022g0060 Nicotiana tabacum HOM05D000018 ORTHO05D005005 1.3e-10 70.1 54 59.3
FAN28G0683 Fragaria x ananassa HOM05D000018 ORTHO05D005005 2.2e-10 69.3 44 63.6
SalBow1G7116 Salvia bowleyana HOM05D000018 ORTHO05D005005 3.7e-10 68.6 40 65.0
Lj4C155T10 Lonicera japonica HOM05D000018 ORTHO05D005005 1.9e-09 66.2 39 66.7
FAN19G2018 Fragaria x ananassa HOM05D000018 ORTHO05D005005 2.4e-09 65.9 40 65.0
Sc03g0001770 Simmondsia chinensis HOM05D000018 ORTHO05D005005 2.7e-08 62.4 42 61.9
COL.COLO4_11463 Corchorus olitorius HOM05D000018 ORTHO05D005005 2.3e-07 59.3 41 56.1
Nitab4.5_0001603g0100 Nicotiana tabacum HOM05D000018 ORTHO05D005005 3.0e-07 58.9 40 60.0
Cre10.g466700 Chlamydomonas reinhardtii HOM05D001438 ORTHO05D001336 7.3e-06 54.3 60 41.7


User provided reference genes

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