Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 0.0e+00 1408.3 691 100.0
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 5.0e-155 552.4 686 46.9
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 2.9e-150 536.6 701 46.2
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 7.1e-149 531.9 681 45.5
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.3e-147 527.7 699 44.1
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 2.4e-144 516.9 684 44.6
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 9.9e-143 511.5 629 45.8
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.2e-141 506.1 611 46.3
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.7e-140 503.4 683 44.4
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.1e-139 499.2 695 43.6
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 9.6e-138 495.0 691 42.8
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.7e-134 484.2 674 42.7
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 2.9e-134 483.4 683 42.9
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.4e-134 481.9 695 41.4
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.4e-133 481.1 694 41.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 4.2e-133 479.6 720 40.0
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 5.4e-133 479.2 685 40.7
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 1.0e-131 474.9 688 41.4
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 1.3e-131 474.6 698 39.7
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.9e-131 473.0 684 41.7
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.3e-130 469.9 727 40.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.6e-130 469.2 664 42.8
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 1.3e-129 468.0 697 40.5
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.7e-126 457.6 731 40.4
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.4e-125 454.5 690 40.3
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.2e-125 453.0 684 40.4
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 7.1e-125 452.2 685 39.6
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 7.9e-124 448.7 597 44.1
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 8.7e-123 445.3 691 38.8
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 4.3e-122 443.0 709 39.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 9.6e-122 441.8 693 38.8
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 1.3e-121 441.4 701 39.1
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 6.9e-120 435.6 679 37.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.2e-119 434.9 690 37.7
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 4.5e-119 433.0 689 39.2
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 4.5e-119 433.0 689 38.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 4.9e-118 429.5 686 39.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 6.0e-116 422.5 688 39.1
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.0e-115 421.8 685 38.8
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.3e-115 420.6 685 38.7
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 5.1e-115 419.5 698 38.7
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 6.7e-115 419.1 687 38.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 3.3e-114 416.8 688 36.3
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 5.6e-114 416.0 699 37.5
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 2.1e-113 414.1 691 37.2
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 6.2e-113 412.5 686 38.3
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 1.4e-112 411.4 688 38.5
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 2.4e-112 410.6 682 39.4
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 1.5e-111 407.9 576 43.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 3.4e-111 406.8 567 43.4
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.3e-107 394.8 693 34.8
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 8.7e-107 392.1 674 36.1
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.5e-106 391.3 596 40.3
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 3.7e-105 386.7 682 35.6
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 4.8e-105 386.3 684 35.5
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 2.4e-104 384.0 696 35.5
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 2.0e-103 380.9 570 39.8
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 5.9e-103 379.4 691 37.0
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 8.5e-102 375.6 686 35.7
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 1.4e-101 374.8 704 34.9
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 2.5e-101 374.0 684 35.7
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 2.0e-98 364.4 682 36.4
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 2.5e-98 364.0 684 34.9
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 1.7e-97 361.3 673 37.4
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 2.2e-97 360.9 685 35.8
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 2.8e-97 360.5 688 35.2
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 4.8e-97 359.8 680 34.1
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 2.4e-96 357.5 685 34.2
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 4.1e-96 356.7 680 35.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 2.2e-94 350.9 675 35.3
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 2.5e-93 347.4 672 35.4
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 2.1e-92 344.4 681 34.7
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.9e-91 340.1 678 35.0
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 1.7e-89 334.7 597 35.8
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 2.2e-89 334.3 687 33.6
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 8.2e-89 332.4 685 32.6
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 5.3e-88 329.7 690 35.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 2.6e-87 327.4 547 38.0
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.3e-86 325.1 707 31.5
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 6.5e-86 322.8 363 49.3
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.2e-85 320.5 674 32.2
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 5.2e-83 313.2 743 33.0
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 4.8e-81 306.6 614 33.6
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 7.7e-79 299.3 705 32.1
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 4.2e-77 293.5 504 35.9
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.1e-76 291.2 568 34.5
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 2.3e-75 287.7 442 40.0
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 9.7e-74 282.3 680 31.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 9.7e-74 282.3 688 32.4
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.3e-73 282.0 569 33.4
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.1e-72 278.9 663 32.6
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.2e-68 265.4 380 43.2
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 1.5e-66 258.5 708 29.9
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.7e-66 256.5 712 29.9
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.0e-63 248.1 428 36.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 1.3e-62 245.4 708 29.9
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.8e-60 237.7 435 36.3
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 1.2e-55 222.2 396 35.4
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.0e-55 221.5 324 41.4
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-41 175.3 194 50.0
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.1e-35 154.5 372 32.5
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 3.2e-32 144.4 288 34.4
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.0e-27 127.5 149 47.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.8e-25 120.9 136 47.8
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.5e-21 108.2 252 32.1
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.4e-18 97.8 384 26.0
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 4.2e-16 90.9 664 23.0
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.1e-15 88.6 79 55.7
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.1e-15 88.6 79 55.7
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.7e-14 85.5 414 24.9
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.9e-13 82.0 178 33.7
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 2.5e-13 81.6 95 46.3
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 4.3e-13 80.9 300 24.7
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 7.3e-13 80.1 138 36.2
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 5.3e-11 73.9 340 24.7
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 3.2e-08 64.7 53 52.8
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 7.1e-08 63.5 229 24.5
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.2e-07 62.8 44 61.4


User provided reference genes

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