Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 6305.3 3192 100.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2994.1 3232 50.8
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2975.3 3215 50.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2947.1 3218 50.7
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2917.5 3275 49.3
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2899.4 2972 52.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2837.4 3475 46.2
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2800.0 3234 48.7
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2770.7 3242 47.4
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2752.2 3283 47.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2738.4 3248 47.7
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2689.1 3229 47.1
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2662.5 3244 46.1
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2649.4 3215 46.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2615.9 3280 45.6
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2615.1 3248 46.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2612.8 3266 45.4
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2588.9 3231 45.4
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2572.0 3252 45.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2570.4 3235 45.6
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2565.8 3195 45.3
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2562.7 3210 46.2
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2546.5 3238 45.1
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2546.2 3236 44.9
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2535.8 3253 45.5
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2525.4 3273 44.4
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2511.9 3248 43.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2506.5 3273 44.3
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2503.4 3162 45.9
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2499.9 3273 44.1
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2495.3 3356 43.9
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2461.4 3892 39.3
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2457.6 3241 43.9
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2454.5 3283 43.0
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2426.7 3232 43.7
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2388.6 3245 43.1
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2382.8 2953 45.8
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2377.4 2886 46.5
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2377.1 3243 43.1
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2362.4 3276 42.1
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2360.1 3239 42.9
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2349.7 3246 42.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2336.2 3230 42.8
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2327.0 3233 42.3
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2322.4 3326 41.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2299.2 3244 42.6
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2297.3 3240 41.9
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2292.7 3290 41.2
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2258.4 3263 41.3
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2249.9 2091 55.7
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2234.9 3234 40.7
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2220.3 3226 41.1
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2215.3 3244 41.4
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2212.6 3244 40.9
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2200.2 3253 40.9
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2200.2 3253 40.9
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2191.0 3123 41.9
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2181.4 3253 41.4
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2171.0 3235 40.6
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2157.5 3242 40.4
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2150.2 3251 40.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2128.2 3286 39.7
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 2115.9 2844 42.9
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2103.6 3182 40.4
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2082.0 3266 39.6
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 2081.6 1719 61.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 2052.3 1788 59.2
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2049.6 2927 41.9
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2045.0 3253 39.4
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2017.3 3052 39.7
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 2011.5 3301 38.4
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1979.5 2502 44.8
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1974.9 2255 48.4
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1959.5 2354 46.8
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1788.9 3271 34.9
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1765.0 1589 58.3
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1759.6 2931 37.9
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1739.9 1343 65.5
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1685.6 3203 35.7
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1656.3 1374 61.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1624.8 1668 52.0
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1567.7 1293 61.8
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1553.9 1454 54.2
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1478.8 1341 56.4
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1440.6 1748 46.1
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1414.8 1213 59.7
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1356.3 1356 52.7
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1335.5 1865 42.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1334.3 2614 35.1
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1320.4 1202 56.6
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1216.4 1098 56.5
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1200.7 1891 38.3
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 0.0e+00 1198.7 1396 48.4
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1180.6 2537 32.6
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1108.2 1921 36.0
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 0.0e+00 1088.6 1708 39.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 0.0e+00 1076.6 1906 35.2
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.2e-280 971.8 1315 41.3
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 9.9e-246 855.9 591 71.7
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.9e-229 801.2 1881 31.4
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 5.1e-226 790.4 1897 31.2
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.4e-220 771.5 1272 37.9
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-219 768.8 1291 37.7
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 3.5e-211 741.1 1302 35.9
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.0e-198 698.7 654 55.5
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.0e-186 658.3 1192 36.8
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.6e-179 636.0 2159 27.4
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 3.1e-159 568.5 887 39.5
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.4e-151 542.3 882 39.2
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.7e-144 518.5 949 37.8
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 4.1e-143 515.0 1573 28.2
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 6.6e-141 507.7 951 34.8
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.5e-140 505.8 465 56.1
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 4.0e-130 471.9 954 34.1
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 2.4e-114 419.5 451 47.2
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 7.9e-102 377.9 335 61.8
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 5.8e-97 361.7 216 81.0
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.4e-95 357.1 968 28.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 9.0e-90 337.8 896 29.5
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.6e-89 336.3 878 28.2
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.7e-88 333.6 856 30.1
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.4e-82 313.2 222 69.4
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 4.5e-81 308.9 381 46.5
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.1e-62 246.9 211 60.2
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 4.4e-60 239.2 436 36.7
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.7e-59 237.3 239 58.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 4.7e-54 219.2 679 27.4
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.8e-50 207.2 146 68.5
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.4e-50 206.8 153 66.7
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 9.1e-50 204.9 152 66.4
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 1.2e-49 204.5 152 70.4
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 2.2e-43 183.7 1021 22.3
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.7e-43 183.0 105 83.8
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.1e-42 181.4 1237 21.6
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-38 167.5 623 26.2
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.6e-38 166.4 172 57.6
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 1.4e-37 164.5 158 51.3
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 2.7e-33 150.2 584 25.9
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.0e-32 148.3 209 42.1
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 5.2e-29 136.0 113 59.3
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 3.4e-28 133.3 203 38.4
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.0e-24 120.2 73 76.7
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-23 115.2 396 25.5
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.6e-22 114.4 336 28.3
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.8e-22 113.6 65 83.1
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 8.9e-21 108.6 173 38.2
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 7.1e-18 99.0 205 28.8
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.0e-13 83.2 102 41.2
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 7.6e-12 79.0 119 40.3
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 9.9e-12 78.6 195 28.2
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.3e-11 78.2 71 56.3
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 1.7e-11 77.8 108 39.8
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.2e-11 77.4 57 61.4
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 2.2e-11 77.4 223 27.4
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 7.1e-10 72.4 67 52.2
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 2.1e-09 70.9 452 21.7
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 2.1e-09 70.9 78 42.3
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 7.8e-09 68.9 691 20.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.7e-08 67.8 42 78.6
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 3.0e-08 67.0 321 26.8
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 3.3e-07 63.5 38 73.7
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 1.2e-06 61.6 162 27.8
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.7e-06 59.7 185 24.9
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 6.2e-06 59.3 318 22.0
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 6.2e-06 59.3 347 22.8


User provided reference genes

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