Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05420 Coffea canephora HOM05D006676 ORTHO05D008394 5.0e-78 294.7 183 100.0
Sopen02g015580 Solanum pennellii HOM05D006676 ORTHO05D008394 2.2e-49 199.5 183 65.0
Manes.13G131900 Manihot esculenta HOM05D006676 ORTHO05D008394 3.2e-48 195.7 183 62.3
Dinv26772 Davidia involucrata HOM05D006676 ORTHO05D008394 5.4e-48 194.9 183 63.9
TAR625G0739 Trochodendron aralioides HOM05D006676 ORTHO05D008394 8.7e-46 187.6 177 61.0
Solyc02g065370.3 Solanum lycopersicum HOM05D006676 ORTHO05D008394 1.9e-45 186.4 183 68.3
TWI09G1529 Tripterygium wilfordii HOM05D006676 ORTHO05D008394 5.6e-45 184.9 178 61.2
Nn6g32155 Nelumbo nucifera HOM05D006676 ORTHO05D008394 7.3e-45 184.5 177 62.1
Glyma.01G182300 Glycine max HOM05D006676 ORTHO05D008394 6.2e-44 181.4 176 56.8
Hma1.2p1_0261F.1_g105020 Hydrangea macrophylla HOM05D006676 ORTHO05D008394 6.2e-44 181.4 183 59.6
QL06p044204 Quercus lobata HOM05D006676 ORTHO05D008394 6.2e-44 181.4 175 60.6
Actinidia36526 Actinidia chinensis HOM05D006676 ORTHO05D008394 1.4e-43 180.3 176 65.9
ECA232G0167 Erigeron canadensis HOM05D006676 ORTHO05D008394 1.4e-43 180.3 183 59.6
MSTRG.15406 Avicennia marina HOM05D006676 ORTHO05D008394 1.8e-43 179.9 173 62.4
Glyma.11G060600 Glycine max HOM05D006676 ORTHO05D008394 9.0e-43 177.6 176 55.7
Lj2g0022488 Lotus japonicus HOM05D006676 ORTHO05D008394 1.2e-42 177.2 178 55.1
Lalb_Chr05g0213091 Lupinus albus HOM05D006676 ORTHO05D008394 1.2e-42 177.2 175 56.0
CAN.G93.2 Capsicum annuum HOM05D006676 ORTHO05D008394 7.6e-42 174.5 181 65.7
Nitab4.5_0002126g0070 Nicotiana tabacum HOM05D006676 ORTHO05D008394 1.7e-41 173.3 183 68.3
Nitab4.5_0000090g0080 Nicotiana tabacum HOM05D006676 ORTHO05D008394 3.8e-41 172.2 183 67.8
Prupe.7G145000 Prunus persica HOM05D006676 ORTHO05D008394 4.9e-41 171.8 177 58.8
Actinidia12084 Actinidia chinensis HOM05D006676 ORTHO05D008394 6.4e-41 171.4 185 64.9
Ciclev10026596m.g Citrus clementina HOM05D006676 ORTHO05D008394 8.4e-41 171.0 185 56.2
CiPaw.01G028300 Carya illinoinensis HOM05D006676 ORTHO05D008394 2.4e-40 169.5 183 57.4
ClCG02G013070 Citrullus lanatus HOM05D006676 ORTHO05D008394 3.2e-40 169.1 175 57.1
PGSC0003DMG400002746 Solanum tuberosum HOM05D006676 ORTHO05D008394 4.2e-40 168.7 183 66.7
Thecc.01G046000 Theobroma cacao HOM05D006676 ORTHO05D008394 2.1e-39 166.4 183 58.5
arahy.Tifrunner.gnm1.ann1.TQQ6DV Arachis hypogaea HOM05D006676 ORTHO05D008394 7.8e-39 164.5 182 53.3
Sed0003061 Sechium edule HOM05D006676 ORTHO05D008394 1.0e-38 164.1 175 54.9
MD02G1159200 Malus domestica HOM05D006676 ORTHO05D008394 1.7e-38 163.3 180 57.2
PGR102G2956 Punica granatum HOM05D006676 ORTHO05D008394 2.3e-38 162.9 179 53.1
HanXRQChr15g0489591 Helianthus annuus HOM05D006676 ORTHO05D008394 3.0e-38 162.5 171 64.9
Phvul.002G023300 Phaseolus vulgaris HOM05D006676 ORTHO05D008394 3.0e-38 162.5 175 50.3
Duzib187G2000 Durio zibethinus HOM05D006676 ORTHO05D008394 5.1e-38 161.8 182 58.8
Potri.007G034600 Populus trichocarpa HOM05D006676 ORTHO05D008394 5.1e-38 161.8 189 55.6
arahy.Tifrunner.gnm1.ann1.A5DXZZ Arachis hypogaea HOM05D006676 ORTHO05D008394 8.7e-38 161.0 182 52.2
COL.COLO4_22185 Corchorus olitorius HOM05D006676 ORTHO05D008394 8.7e-38 161.0 181 57.5
Eucgr.H01944 Eucalyptus grandis HOM05D006676 ORTHO05D008394 8.7e-38 161.0 172 57.0
VMungo1215G3052 Vigna mungo HOM05D006676 ORTHO05D008394 8.7e-38 161.0 175 51.4
arahy.Tifrunner.gnm1.ann1.MI0500 Arachis hypogaea HOM05D006676 ORTHO05D008394 2.5e-37 159.5 184 60.9
CsaV3_2G017150 Cucumis sativus L. HOM05D006676 ORTHO05D008394 2.5e-37 159.5 175 52.6
MD00G1067500 Malus domestica HOM05D006676 ORTHO05D008394 3.3e-37 159.1 179 53.6
MELO3C020918.2 Cucumis melo HOM05D006676 ORTHO05D008394 4.3e-37 158.7 175 51.4
Gohir.A02G161300 Gossypium hirsutum HOM05D006676 ORTHO05D008394 4.3e-37 158.7 181 55.8
Lj7A15T51 Lonicera japonica HOM05D006676 ORTHO05D008394 7.3e-37 157.9 184 57.1
FAN23G1040 Fragaria x ananassa HOM05D006676 ORTHO05D008394 9.6e-37 157.5 176 54.5
RcHm_v2.0_Chr2g0103301 Rosa chinensis HOM05D006676 ORTHO05D008394 9.6e-37 157.5 175 58.9
CANSAT01G0168 Cannabis sativa HOM05D006676 ORTHO05D008394 1.3e-36 157.1 170 55.9
Gorai.003G019600 Gossypium raimondii HOM05D006676 ORTHO05D008394 1.3e-36 157.1 181 54.7
Gohir.D03G019200 Gossypium hirsutum HOM05D006676 ORTHO05D008394 1.4e-35 153.7 181 54.7
Oeu032926.1 Olea europaea HOM05D006676 ORTHO05D008394 2.4e-35 152.9 177 54.8
FAN26G0249 Fragaria x ananassa HOM05D006676 ORTHO05D008394 3.1e-35 152.5 176 60.8
FvH4_1g14550 Fragaria vesca HOM05D006676 ORTHO05D008394 4.0e-35 152.1 176 54.5
FAN28G2791 Fragaria x ananassa HOM05D006676 ORTHO05D008394 4.0e-35 152.1 176 59.1
FAN19G1679 Fragaria x ananassa HOM05D006676 ORTHO05D008394 5.3e-35 151.8 176 55.7
Duzib147G0589 Durio zibethinus HOM05D006676 ORTHO05D008394 4.5e-34 148.7 171 53.8
Cfa004230 Carpinus fangiana HOM05D006676 ORTHO05D008394 5.8e-34 148.3 148 58.8
PSO675G6281 Papaver somniferum HOM05D006676 ORTHO05D008394 9.9e-34 147.5 178 50.6
Ca_24806_v3 Cicer arietinum L. HOM05D006676 ORTHO05D008394 2.9e-33 146.0 175 48.0
Sabra07G0030200 Salix brachista HOM05D001814 ORTHO05D001845 6.4e-33 144.8 184 51.6
EL10Ac6g14836 Beta vulgaris HOM05D006676 ORTHO05D008394 3.2e-32 142.5 178 53.9
PSO541G6387 Papaver somniferum HOM05D006676 ORTHO05D008394 5.4e-32 141.7 178 53.9
Rhsim08G0109100 Rhododendron simsii HOM05D006676 ORTHO05D008394 9.3e-32 141.0 278 42.1
Psat2g163920 Pisum sativum HOM05D006676 ORTHO05D008394 2.7e-31 139.4 190 45.8
Peaxi162Scf00019g02117 Petunia axillaris HOM05D006676 ORTHO05D008394 3.9e-30 135.6 183 58.5
Aqoxy6G00953 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 1.1e-29 134.0 184 51.1
Cpa.g.sc15.74 Carica papaya HOM05D006676 ORTHO05D008394 1.5e-29 133.7 138 57.2
DCAR_025672 Daucus carota HOM05D006676 ORTHO05D008394 5.6e-29 131.7 143 58.0
CDE02G4077 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 9.6e-29 131.0 179 48.0
Hund14112 Selenicereus undatus HOM05D006676 ORTHO05D008394 9.6e-29 131.0 195 47.2
Sc16g0001500 Simmondsia chinensis HOM05D006676 ORTHO05D008394 9.6e-29 131.0 193 49.2
Migut.K00838 Erythranthe guttata HOM05D006676 ORTHO05D008394 1.8e-27 126.7 186 57.0
Medtr5g018550 Medicago truncatula HOM05D006676 ORTHO05D008394 2.4e-27 126.3 184 45.1
AUR62027231 Chenopodium quinoa HOM05D006676 ORTHO05D008394 2.0e-26 123.2 171 47.4
BolC3t20221H Brassica oleracea HOM05D006676 ORTHO05D008394 3.4e-26 122.5 169 53.8
vmacro17885 Vaccinium macrocarpon HOM05D006676 ORTHO05D008394 7.6e-26 121.3 234 41.5
Thhalv10026327m.g Eutrema salsugineum HOM05D006676 ORTHO05D008394 2.2e-25 119.8 179 44.7
Sp7g34680 Schrenkiella parvula HOM05D006676 ORTHO05D008394 6.4e-25 118.2 178 44.4
TPR.G29856 Trifolium pratense HOM05D006676 ORTHO05D008394 8.4e-25 117.9 195 47.2
Dinv39914 Davidia involucrata HOM05D006676 ORTHO05D008394 3.2e-24 115.9 99 67.7
Carub.0007s0328 Capsella rubella HOM05D006676 ORTHO05D008394 1.6e-23 113.6 185 40.5
AL7G13870 Arabidopsis lyrata HOM05D006676 ORTHO05D008394 3.5e-23 112.5 181 40.9
Ah.02g126080 Amaranthus hybridus HOM05D006676 ORTHO05D008394 6.0e-23 111.7 147 53.7
MBI04_g03667_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 6.0e-23 111.7 154 46.8
BcaC01g00433 Brassica carinata HOM05D006676 ORTHO05D008394 7.9e-23 111.3 169 49.7
C03p79700 Brassica napus HOM05D006676 ORTHO05D008394 7.9e-23 111.3 169 49.7
BraA01t00181Z Brassica rapa HOM05D006676 ORTHO05D008394 1.0e-22 110.9 178 41.6
unitig_749.g13556 Utricularia gibba HOM05D006676 ORTHO05D008394 1.3e-22 110.5 163 43.6
CARHR245420 Cardamine hirsuta HOM05D006676 ORTHO05D008394 1.8e-22 110.2 182 41.2
Zm00001eb206480 Zea mays HOM05D006676 ORTHO05D008394 1.8e-22 110.2 175 42.3
AT4G37090 Arabidopsis thaliana HOM05D006676 ORTHO05D008394 2.3e-22 109.8 179 41.9
BcaNung03502 Brassica carinata HOM05D006676 ORTHO05D008394 3.0e-22 109.4 177 40.7
Aa31LG6G13890 Aethionema arabicum HOM05D006676 ORTHO05D008394 8.7e-22 107.8 168 38.1
SGA_v2.0_scaffold175G39367 Striga asiatica HOM05D006676 ORTHO05D008394 1.5e-21 107.1 144 49.3
HPP92_004789 Vanilla planifolia HOM05D006676 ORTHO05D008394 1.5e-21 107.1 221 36.7
C01p02080 Brassica napus HOM05D006676 ORTHO05D008394 1.9e-21 106.7 177 40.7
BolC1t00200H Brassica oleracea HOM05D006676 ORTHO05D008394 1.9e-21 106.7 177 40.7
A01p01920 Brassica napus HOM05D006676 ORTHO05D008394 7.4e-21 104.8 179 39.7
Os02g0186700 Oryza sativa ssp. japonica HOM05D006676 ORTHO05D008394 1.1e-19 100.9 182 38.5
BraA08t34206Z Brassica rapa HOM05D006676 ORTHO05D008394 4.0e-19 99.0 172 45.9
AUR62003241 Chenopodium quinoa HOM05D006676 ORTHO05D008394 1.5e-18 97.1 171 46.2
A08p22510 Brassica napus HOM05D006676 ORTHO05D008394 2.6e-18 96.3 172 50.6
SGA_v2.0_scaffold1G00184 Striga asiatica HOM05D006676 ORTHO05D008394 6.5e-17 91.7 103 57.3
GSVIVG01005096001 Vitis vinifera HOM05D006676 ORTHO05D008394 2.7e-15 86.3 99 57.6
GSVIVG01004606001 Vitis vinifera HOM05D006676 ORTHO05D008394 3.5e-15 85.9 99 56.6
Sc16g0001490 Simmondsia chinensis HOM05D006676 ORTHO05D008394 1.1e-13 80.9 59 67.8
Haze_15170 Corylus avellana HOM05D006676 ORTHO05D008394 5.7e-13 78.6 64 65.6
THA.LOC104819832 Tarenaya hassleriana HOM05D006676 ORTHO05D008394 7.4e-13 78.2 179 45.8
MBI15_g03557_MAGBIO Magnolia biondii HOM05D006676 ORTHO05D008394 1.1e-11 74.3 60 63.3
Aqoxy2G03321 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 6.9e-11 71.6 140 44.3
Aqoxy6G00951 Aquilegia oxysepala HOM05D006676 ORTHO05D008394 6.9e-11 71.6 140 44.3
ATR0800G049 Amborella trichopoda HOM05D006676 ORTHO05D008394 4.5e-10 68.9 62 58.1
BcaB03g12365 Brassica carinata HOM05D006676 ORTHO05D008394 4.2e-08 62.4 56 51.8
BcaB03g12363 Brassica carinata HOM05D006676 ORTHO05D008394 7.2e-08 61.6 183 38.8
CDE01G0251 Ceratophyllum demersum HOM05D006676 ORTHO05D008394 2.7e-07 59.7 72 47.2
arahy.Tifrunner.gnm1.ann1.9JJG5X Arachis hypogaea HOM05D006676 ORTHO05D008394 2.3e-06 56.6 92 41.3
ATR0800G094 Amborella trichopoda HOM05D006676 ORTHO05D008394 8.8e-06 54.7 123 37.4


User provided reference genes

Program Settings