Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05400 Coffea canephora HOM05D007578 ORTHO05D009497 2.0e-77 292.7 188 100.0
Nitab4.5_0000108g0140 Nicotiana tabacum HOM05D007578 ORTHO05D009497 5.8e-37 158.3 164 72.6
Nitab4.5_0007463g0020 Nicotiana tabacum HOM05D007578 ORTHO05D009497 3.7e-36 155.6 164 72.0
MSTRG.23805 Avicennia marina HOM05D007578 ORTHO05D009497 1.3e-33 147.1 168 69.0
Peaxi162Scf00535g00071 Petunia axillaris HOM05D007578 ORTHO05D009497 2.1e-31 139.8 167 65.3
Sopen02g034790 Solanum pennellii HOM05D007578 ORTHO05D009497 1.8e-30 136.7 165 66.1
Solyc02g090100.1 Solanum lycopersicum HOM05D007578 ORTHO05D009497 1.7e-28 130.2 165 64.8
Lj4P136T24 Lonicera japonica HOM05D007578 ORTHO05D009497 2.9e-28 129.4 135 72.6
CAN.G836.20 Capsicum annuum HOM05D007578 ORTHO05D009497 7.1e-27 124.8 132 73.5
SGA_v2.0_scaffold15G07205 Striga asiatica HOM05D007578 ORTHO05D009497 9.2e-27 124.4 167 67.1
Potri.007G034300 Populus trichocarpa HOM05D007578 ORTHO05D009497 1.6e-26 123.6 168 64.9
PGSC0003DMG400037576 Solanum tuberosum HOM05D007578 ORTHO05D009497 2.1e-26 123.2 165 63.6
Migut.H00501 Erythranthe guttata HOM05D007578 ORTHO05D009497 4.6e-26 122.1 125 73.6
Sabra07G0029900 Salix brachista HOM05D007578 ORTHO05D009497 6.0e-26 121.7 163 64.4
TPR.G29848 Trifolium pratense HOM05D007578 ORTHO05D009497 3.0e-25 119.4 128 77.3
Psat0s4627g0160 Pisum sativum HOM05D007578 ORTHO05D009497 6.6e-25 118.2 129 76.0
Lalb_Chr16g0378091 Lupinus albus HOM05D007578 ORTHO05D009497 8.6e-25 117.9 149 67.8
Lalb_Chr16g0378311 Lupinus albus HOM05D007578 ORTHO05D009497 8.6e-25 117.9 149 67.8
Ca_24809_v3 Cicer arietinum L. HOM05D007578 ORTHO05D009497 1.1e-24 117.5 128 68.0
Duzib147G1180 Durio zibethinus HOM05D007578 ORTHO05D009497 1.1e-24 117.5 168 63.7
CSS0031523 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 3.3e-24 115.9 172 62.2
CSS0032257 Camellia sinensis var. sinensis HOM05D007578 ORTHO05D009497 3.3e-24 115.9 172 62.2
QL06p044247 Quercus lobata HOM05D007578 ORTHO05D009497 3.3e-24 115.9 129 72.9
Actinidia36527 Actinidia chinensis HOM05D007578 ORTHO05D009497 4.3e-24 115.5 165 65.5
Prupe.7G145300 Prunus persica HOM05D007578 ORTHO05D009497 7.3e-24 114.8 156 64.7
Haze_15166 Corylus avellana HOM05D007578 ORTHO05D009497 1.2e-23 114.0 171 63.2
DCAR_010946 Daucus carota HOM05D007578 ORTHO05D009497 1.2e-23 114.0 168 63.7
Manes.13G132100 Manihot esculenta HOM05D007578 ORTHO05D009497 2.8e-23 112.8 168 64.3
THA.LOC104804219 Tarenaya hassleriana HOM05D007578 ORTHO05D009497 2.8e-23 112.8 172 61.0
TAR628G0552 Trochodendron aralioides HOM05D007578 ORTHO05D009497 2.8e-23 112.8 172 62.2
COL.COLO4_22180 Corchorus olitorius HOM05D007578 ORTHO05D009497 4.7e-23 112.1 169 60.4
TAR376G0355 Trochodendron aralioides HOM05D007578 ORTHO05D009497 4.7e-23 112.1 170 58.8
Oeu032922.1 Olea europaea HOM05D007578 ORTHO05D009497 8.1e-23 111.3 162 61.1
Gohir.A02G161500 Gossypium hirsutum HOM05D007578 ORTHO05D009497 1.4e-22 110.5 144 58.3
CiPaw.01G029100 Carya illinoinensis HOM05D007578 ORTHO05D009497 1.8e-22 110.2 171 60.8
Thecc.01G045800 Theobroma cacao HOM05D007578 ORTHO05D009497 6.9e-22 108.2 169 62.1
Gorai.003G019400 Gossypium raimondii HOM05D007578 ORTHO05D009497 2.0e-21 106.7 144 59.0
Hma1.2p1_0261F.1_g104930 Hydrangea macrophylla HOM05D007578 ORTHO05D009497 2.0e-21 106.7 162 57.4
Medtr5g018590 Medicago truncatula HOM05D007578 ORTHO05D009497 2.6e-21 106.3 137 65.7
arahy.Tifrunner.gnm1.ann1.25C3YR Arachis hypogaea HOM05D007578 ORTHO05D009497 3.4e-21 105.9 173 60.1
Duzib264G1198 Durio zibethinus HOM05D007578 ORTHO05D009497 3.4e-21 105.9 169 58.0
MD15G1273300 Malus domestica HOM05D007578 ORTHO05D009497 3.4e-21 105.9 160 60.6
arahy.Tifrunner.gnm1.ann1.UX6CPD Arachis hypogaea HOM05D007578 ORTHO05D009497 4.4e-21 105.5 133 72.9
Glyma.01G182600 Glycine max HOM05D007578 ORTHO05D009497 4.4e-21 105.5 128 74.2
C04p52990 Brassica napus HOM05D007578 ORTHO05D009497 9.9e-21 104.4 170 58.8
BolC4t26860H Brassica oleracea HOM05D007578 ORTHO05D009497 9.9e-21 104.4 170 58.8
Glyma.11G060900 Glycine max HOM05D007578 ORTHO05D009497 9.9e-21 104.4 128 74.2
RcHm_v2.0_Chr2g0103251 Rosa chinensis HOM05D007578 ORTHO05D009497 1.3e-20 104.0 166 59.6
Sed0003773 Sechium edule HOM05D007578 ORTHO05D009497 2.2e-20 103.2 167 61.7
Sc03g0001220 Simmondsia chinensis HOM05D007578 ORTHO05D009497 2.2e-20 103.2 166 53.0
SalBow1G1613 Salvia bowleyana HOM05D007578 ORTHO05D009497 2.9e-20 102.8 130 69.2
A04p18050 Brassica napus HOM05D007578 ORTHO05D009497 3.8e-20 102.4 170 58.8
BraA04t17423Z Brassica rapa HOM05D007578 ORTHO05D009497 4.9e-20 102.1 170 58.2
Gohir.A11G045100 Gossypium hirsutum HOM05D007578 ORTHO05D009497 4.9e-20 102.1 169 59.8
Sp4g02640 Schrenkiella parvula HOM05D007578 ORTHO05D009497 6.4e-20 101.7 159 61.6
CANSAT01G2356 Cannabis sativa HOM05D007578 ORTHO05D009497 8.4e-20 101.3 174 58.0
CAN.G1525.2 Capsicum annuum HOM05D007578 ORTHO05D009497 1.1e-19 100.9 152 59.2
Dinv39922 Davidia involucrata HOM05D007578 ORTHO05D009497 1.4e-19 100.5 217 49.8
Thhalv10000353m.g Eutrema salsugineum HOM05D007578 ORTHO05D009497 1.4e-19 100.5 155 61.9
CARHR114700 Cardamine hirsuta HOM05D007578 ORTHO05D009497 1.9e-19 100.1 175 56.0
Cpa.g.sc15.63 Carica papaya HOM05D007578 ORTHO05D009497 1.9e-19 100.1 168 51.8
Ah.03g142130 Amaranthus hybridus HOM05D007578 ORTHO05D009497 2.4e-19 99.8 128 71.1
Aa31LG7G13200 Aethionema arabicum HOM05D007578 ORTHO05D009497 3.2e-19 99.4 127 69.3
BcaB06g27923 Brassica carinata HOM05D007578 ORTHO05D009497 3.2e-19 99.4 170 58.8
PGR102G1240 Punica granatum HOM05D007578 ORTHO05D009497 4.2e-19 99.0 169 59.2
AL4G13660 Arabidopsis lyrata HOM05D007578 ORTHO05D009497 5.4e-19 98.6 175 57.1
MD02G1158500 Malus domestica HOM05D007578 ORTHO05D009497 5.4e-19 98.6 160 58.8
Phvul.002G023600 Phaseolus vulgaris HOM05D007578 ORTHO05D009497 5.4e-19 98.6 128 75.0
FAN19G1163 Fragaria x ananassa HOM05D007578 ORTHO05D009497 7.1e-19 98.2 164 57.3
MELO3C020917.2 Cucumis melo HOM05D007578 ORTHO05D009497 9.3e-19 97.8 124 71.8
Gohir.D11G048600 Gossypium hirsutum HOM05D007578 ORTHO05D009497 9.3e-19 97.8 169 59.2
Lsat_1_v5_gn_3_94000 Lactuca sativa HOM05D007578 ORTHO05D009497 1.2e-18 97.4 144 60.4
FAN26G3047 Fragaria x ananassa HOM05D007578 ORTHO05D009497 2.1e-18 96.7 164 54.9
AT2G23670 Arabidopsis thaliana HOM05D007578 ORTHO05D009497 2.7e-18 96.3 175 56.0
FvH4_1g14510 Fragaria vesca HOM05D007578 ORTHO05D009497 2.7e-18 96.3 164 54.3
FAN23G2171 Fragaria x ananassa HOM05D007578 ORTHO05D009497 3.5e-18 95.9 162 56.2
TWI53G0440 Tripterygium wilfordii HOM05D007578 ORTHO05D009497 3.5e-18 95.9 121 75.2
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 4.6e-18 95.5 167 57.5
Gohir.D03G019000 Gossypium hirsutum HOM05D007578 ORTHO05D009497 6.0e-18 95.1 135 57.8
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 7.8e-18 94.7 171 59.6
Gorai.007G052200 Gossypium raimondii HOM05D007578 ORTHO05D009497 1.0e-17 94.4 169 58.6
EL10Ac6g14844 Beta vulgaris HOM05D007578 ORTHO05D009497 1.3e-17 94.0 170 57.1
MBI07_g23234_MAGBIO Magnolia biondii HOM05D007578 ORTHO05D009497 2.3e-17 93.2 169 58.6
ClCG02G013060 Citrullus lanatus HOM05D007578 ORTHO05D009497 3.0e-17 92.8 126 70.6
Peaxi162Scf00150g00132 Petunia axillaris HOM05D007578 ORTHO05D009497 5.1e-17 92.0 109 75.2
CsaV3_2G017140 Cucumis sativus L. HOM05D007578 ORTHO05D009497 6.6e-17 91.7 126 69.8
CDE11G1131 Ceratophyllum demersum HOM05D007578 ORTHO05D009497 8.7e-17 91.3 170 47.1
Carub.0004s0288 Capsella rubella HOM05D007578 ORTHO05D009497 1.9e-16 90.1 127 66.1
Aqoxy2G01906 Aquilegia oxysepala HOM05D007578 ORTHO05D009497 3.3e-16 89.4 163 50.9
Ciclev10026636m.g Citrus clementina HOM05D007578 ORTHO05D009497 3.3e-16 89.4 169 46.7
Dinv26776 Davidia involucrata HOM05D007578 ORTHO05D009497 4.3e-16 89.0 148 56.1
HanXRQChr12g0378461 Helianthus annuus HOM05D007578 ORTHO05D009497 4.8e-15 85.5 123 49.6
PSO170G5738 Papaver somniferum HOM05D007578 ORTHO05D009497 2.0e-13 80.1 184 50.0
FAN28G2485 Fragaria x ananassa HOM05D007578 ORTHO05D009497 1.3e-12 77.4 103 68.0
PSO017G5052 Papaver somniferum HOM05D007578 ORTHO05D009497 7.1e-11 71.6 172 50.6
unitig_21.g20937 Utricularia gibba HOM05D000261 ORTHO05D001168 1.6e-10 70.5 160 50.0
ECA246G0471 Erigeron canadensis HOM05D007578 ORTHO05D009497 2.1e-10 70.1 116 56.9
HPP92_014833 Vanilla planifolia HOM05D007578 ORTHO05D009497 2.7e-10 69.7 150 43.3
Atru.chr3.471 Acer truncatum HOM05D007578 ORTHO05D009497 4.6e-10 68.9 163 54.6
ATR0787G067 Amborella trichopoda HOM05D007578 ORTHO05D009497 2.3e-09 66.6 143 42.0
Os02g0815300 Oryza sativa ssp. japonica HOM05D060333 ORTHO05D049488 2.4e-06 56.6 109 63.3


User provided reference genes

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