Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 7.9e-34 146.4 65 100.0
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 1.7e-20 102.1 64 64.1
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 1.4e-19 99.0 62 58.1
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.4e-19 99.0 58 63.8
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.9e-19 98.6 65 60.0
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.2e-19 97.8 64 62.5
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 9.3e-19 96.3 60 60.0
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 9.3e-19 96.3 50 70.0
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 9.3e-19 96.3 65 58.5
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.6e-18 95.5 51 68.6
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 1.6e-18 95.5 51 68.6
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 1.6e-18 95.5 51 68.6
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 1.6e-18 95.5 46 76.1
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 1.6e-18 95.5 67 58.2
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.1e-18 95.1 51 68.6
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 2.1e-18 95.1 62 58.1
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 4.6e-18 94.0 70 54.3
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 4.6e-18 94.0 51 68.6
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 6.0e-18 93.6 47 72.3
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.0e-17 92.8 64 54.7
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.8e-17 92.0 62 56.5
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.3e-17 91.7 51 66.7
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 3.0e-17 91.3 51 62.7
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.0e-17 91.3 51 66.7
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.0e-17 91.3 66 57.6
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 3.9e-17 90.9 50 66.0
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.9e-17 90.9 46 73.9
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 5.1e-17 90.5 51 66.7
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.7e-17 90.1 56 60.7
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 8.7e-17 89.7 51 64.7
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 8.7e-17 89.7 51 64.7
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 4.3e-16 87.4 63 55.6
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 7.4e-16 86.7 53 60.4
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 7.4e-16 86.7 69 56.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.3e-15 85.9 61 54.1
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.6e-15 85.5 61 52.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 2.1e-15 85.1 62 53.2
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 2.1e-15 85.1 62 53.2
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 2.8e-15 84.7 52 59.6
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 3.7e-15 84.3 59 54.2
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.7e-15 84.3 64 46.9
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 8.2e-15 83.2 47 66.0
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 1.8e-14 82.0 46 60.9
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.4e-14 81.6 61 52.5
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 3.1e-14 81.3 65 47.7
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 4.1e-14 80.9 52 55.8
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 5.3e-14 80.5 52 55.8
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.5e-13 79.0 57 50.9
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.0e-13 78.6 46 58.7
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 3.4e-13 77.8 58 44.8
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 7.6e-13 76.6 52 50.0
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 3.8e-12 74.3 46 56.5
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 5.0e-12 73.9 52 51.9
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 5.0e-12 73.9 63 47.6
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 6.5e-12 73.6 43 58.1
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.5e-12 73.6 64 45.3
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 6.5e-12 73.6 54 50.0
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 8.4e-12 73.2 49 51.0
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 8.4e-12 73.2 57 47.4
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.1e-11 72.8 60 46.7
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 1.4e-11 72.4 51 45.1
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 1.4e-11 72.4 43 55.8
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.5e-11 71.6 57 49.1
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.5e-11 71.6 49 51.0
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.5e-11 71.6 56 48.2
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.5e-11 71.6 56 48.2
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.5e-11 71.6 52 50.0
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.5e-11 71.6 49 51.0
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.5e-11 71.6 64 46.9
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.2e-11 71.2 60 46.7
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 3.2e-11 71.2 58 43.1
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.2e-11 70.9 62 46.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 5.5e-11 70.5 58 41.4
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.5e-11 70.5 56 48.2
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.5e-11 70.5 64 40.6
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.5e-11 70.5 43 55.8
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 9.3e-11 69.7 43 55.8
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 9.3e-11 69.7 58 46.6
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 9.3e-11 69.7 43 53.5
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.2e-10 69.3 64 43.8
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.6e-10 68.9 57 43.9
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.6e-10 68.9 43 51.2
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.7e-10 68.2 48 52.1
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 3.5e-10 67.8 50 46.0
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 4.6e-10 67.4 43 51.2
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.6e-10 67.4 49 46.9
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.6e-10 67.4 49 46.9
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 4.6e-10 67.4 49 46.9
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 4.6e-10 67.4 62 40.3
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 6.1e-10 67.0 58 44.8
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.3e-09 65.1 39 66.7
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.3e-09 65.1 61 45.9
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.5e-08 61.6 59 47.5
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.1e-06 54.7 45 51.1
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 9.0e-06 53.1 44 50.0


User provided reference genes

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