Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 5.0e-244 847.8 592 100.0
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.2e-117 427.9 589 62.5
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 3.4e-115 419.9 603 52.1
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 6.3e-114 415.6 589 61.6
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 1.4e-113 414.5 593 62.6
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.7e-112 410.2 591 60.6
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 1.7e-111 407.5 597 53.4
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 2.3e-108 397.1 590 61.7
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 6.8e-108 395.6 602 52.8
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 8.8e-108 395.2 559 64.6
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 2.6e-107 393.7 587 62.5
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 4.4e-107 392.9 590 60.5
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 4.4e-107 392.9 561 63.1
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 2.8e-106 390.2 590 60.5
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 6.3e-106 389.0 590 60.2
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.8e-105 387.5 551 62.3
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 2.4e-105 387.1 547 53.7
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 4.1e-105 386.3 555 63.8
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 3.5e-104 383.3 588 61.1
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 3.5e-104 383.3 549 65.4
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 7.7e-104 382.1 593 48.4
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 1.0e-103 381.7 590 59.8
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 3.3e-102 376.7 534 66.7
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 7.2e-102 375.6 553 64.2
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 1.0e-100 371.7 518 62.7
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 1.4e-100 371.3 549 61.7
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 5.7e-99 365.9 517 66.0
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 3.7e-98 363.2 590 60.5
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 2.4e-97 360.5 552 65.4
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 3.2e-97 360.1 543 62.1
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 7.8e-96 355.5 519 57.8
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 1.0e-95 355.1 592 59.1
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 1.0e-95 355.1 549 63.0
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 1.0e-95 355.1 544 61.0
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 2.3e-95 354.0 534 65.2
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 7.3e-94 349.0 559 59.4
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 9.5e-94 348.6 595 58.8
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 3.1e-92 343.6 571 59.7
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 5.8e-91 339.3 540 60.0
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 4.9e-90 336.3 596 60.6
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 4.9e-90 336.3 540 62.0
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 8.3e-90 335.5 561 57.9
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 1.1e-89 335.1 507 63.9
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 1.4e-89 334.7 533 60.0
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 7.0e-89 332.4 589 58.6
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 2.0e-88 330.9 471 68.4
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 2.7e-88 330.5 544 56.8
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 3.5e-88 330.1 546 56.6
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.3e-87 328.2 593 44.4
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 1.9e-86 324.3 536 49.8
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.8e-85 320.5 513 63.9
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 1.1e-84 318.5 565 55.9
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 1.5e-83 314.7 566 54.9
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 2.6e-83 313.9 525 50.3
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 2.6e-83 313.9 552 57.6
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 3.7e-82 310.1 559 54.9
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 3.7e-82 310.1 518 59.7
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 4.9e-82 309.7 561 49.7
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 1.4e-81 308.1 564 52.3
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 1.4e-81 308.1 563 52.9
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 2.4e-81 307.4 579 51.8
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 5.4e-81 306.2 559 59.4
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 9.2e-81 305.4 553 55.0
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 6.0e-80 302.8 550 58.4
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 1.7e-79 301.2 558 52.3
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 2.3e-79 300.8 556 52.2
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 2.3e-79 300.8 589 52.5
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 3.9e-79 300.1 566 52.8
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 3.9e-79 300.1 555 52.6
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 8.6e-79 298.9 566 52.8
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 1.9e-78 297.7 566 52.5
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 3.3e-78 297.0 557 53.1
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 4.7e-77 293.1 561 53.7
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 1.2e-75 288.5 551 53.5
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 2.0e-75 287.7 585 52.0
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 1.1e-65 255.4 282 47.9
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 4.2e-65 253.4 527 56.0
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 4.8e-61 240.0 279 46.2
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 9.9e-59 232.3 479 47.6
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 7.1e-57 226.1 256 47.7
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.7e-55 221.5 393 69.2
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 2.0e-51 208.0 525 45.5
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.3e-50 205.3 559 44.4
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 6.4e-50 203.0 285 41.1
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 7.4e-46 189.5 236 46.2
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 2.4e-44 184.5 261 39.8
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 6.9e-44 183.0 261 39.5
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 1.1e-41 175.6 408 33.3
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 7.1e-41 172.9 102 75.5
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 1.8e-39 168.3 134 57.5
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.7e-34 151.8 127 59.1
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 3.2e-33 147.5 258 38.8
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 2.3e-31 141.4 113 56.6
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 4.3e-30 137.1 217 39.6
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 1.6e-24 118.6 171 39.2
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 4.3e-22 110.5 150 40.0
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 5.7e-22 110.2 128 48.4
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 1.1e-20 105.9 96 56.2
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 1.9e-17 95.1 138 38.4
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 1.8e-15 88.6 102 45.1
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 2.4e-12 78.2 107 42.1
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 8.5e-10 69.7 118 37.3
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 1.1e-09 69.3 116 37.1
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 5.5e-09 67.0 91 38.5
THA.LOC104809214 Tarenaya hassleriana HOM05D004079 ORTHO05D005437 2.7e-08 64.7 89 36.0
HPP92_006080 Vanilla planifolia HOM05D007242 ORTHO05D009089 2.7e-08 64.7 67 47.8
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 6.1e-08 63.5 92 37.0
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 1.0e-07 62.8 89 38.2
Gohir.A11G028901 Gossypium hirsutum HOM05D004079 ORTHO05D005437 1.4e-07 62.4 93 37.6
Gohir.D11G032200 Gossypium hirsutum HOM05D004079 ORTHO05D005437 1.4e-07 62.4 93 37.6
Gorai.007G035000 Gossypium raimondii HOM05D004079 ORTHO05D005437 1.4e-07 62.4 93 37.6
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 1.8e-07 62.0 96 38.5
COL.COLO4_37914 Corchorus olitorius HOM05D004079 ORTHO05D005437 2.3e-07 61.6 89 37.1
Duzib084G0772 Durio zibethinus HOM05D004079 ORTHO05D005437 2.3e-07 61.6 89 38.2
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 2.3e-07 61.6 89 37.1
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 3.0e-07 61.2 133 29.3
BolC6t39914H Brassica oleracea HOM05D004079 ORTHO05D005437 4.0e-07 60.8 92 35.9
Aa31LG4G4980 Aethionema arabicum HOM05D004079 ORTHO05D005437 5.2e-07 60.5 89 33.7
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 5.2e-07 60.5 89 38.2
Manes.06G097200 Manihot esculenta HOM05D004079 ORTHO05D005437 6.7e-07 60.1 89 34.8
Eucgr.K02912 Eucalyptus grandis HOM05D004079 ORTHO05D005437 8.8e-07 59.7 89 34.8
C06p48780 Brassica napus HOM05D004079 ORTHO05D005437 1.1e-06 59.3 92 34.8
AUR62021753 Chenopodium quinoa HOM05D004079 ORTHO05D005437 1.1e-06 59.3 89 34.8
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 1.1e-06 59.3 102 33.3
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.1e-06 59.3 95 30.5
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.1e-06 59.3 127 31.5
Thecc.03G077200 Theobroma cacao HOM05D004079 ORTHO05D005437 1.1e-06 59.3 97 35.1
BcaC08g46901 Brassica carinata HOM05D004079 ORTHO05D005437 1.5e-06 58.9 92 34.8
BcaC08g46918 Brassica carinata HOM05D004079 ORTHO05D005437 1.5e-06 58.9 92 34.8
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 1.5e-06 58.9 86 36.0
CARHR019550 Cardamine hirsuta HOM05D004079 ORTHO05D005437 2.0e-06 58.5 89 32.6
Dinv38652 Davidia involucrata HOM05D004079 ORTHO05D005437 2.0e-06 58.5 89 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 2.6e-06 58.2 104 30.8
AagrBONN_evm.TU.Sc2ySwM_344.782 Anthoceros agrestis HOM05D004079 ORTHO05D005437 2.6e-06 58.2 91 31.9
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 2.6e-06 58.2 89 32.6
AUR62008344 Chenopodium quinoa HOM05D004079 ORTHO05D005437 2.6e-06 58.2 86 36.0
EL10Ac5g10922 Beta vulgaris HOM05D004079 ORTHO05D005437 3.3e-06 57.8 132 30.3
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 3.3e-06 57.8 91 33.0
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 3.3e-06 57.8 91 33.0
Hma1.2p1_0104F.1_g050360 Hydrangea macrophylla HOM05D004079 ORTHO05D005437 3.3e-06 57.8 92 35.9
Lj5P117T35 Lonicera japonica HOM05D004079 ORTHO05D005437 3.3e-06 57.8 89 34.8
CDE06G0164 Ceratophyllum demersum HOM05D004079 ORTHO05D005437 4.4e-06 57.4 92 33.7
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 4.4e-06 57.4 113 32.7
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 4.4e-06 57.4 89 32.6
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.4e-06 57.4 91 33.0
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.4e-06 57.4 91 33.0
Oeu006174.1 Olea europaea HOM05D004079 ORTHO05D005437 4.4e-06 57.4 91 34.1
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 5.7e-06 57.0 89 32.6
A07p40430 Brassica napus HOM05D004079 ORTHO05D005437 5.7e-06 57.0 92 33.7
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 5.7e-06 57.0 89 32.6
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 5.7e-06 57.0 89 32.6
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 5.7e-06 57.0 89 32.6
BraA07t31585Z Brassica rapa HOM05D004079 ORTHO05D005437 5.7e-06 57.0 92 33.7
Cpa.g.sc17.195 Carica papaya HOM05D004079 ORTHO05D005437 5.7e-06 57.0 107 30.8
RcHm_v2.0_Chr7g0180381 Rosa chinensis HOM05D004079 ORTHO05D005437 5.7e-06 57.0 91 33.0
Ah.02g113130 Amaranthus hybridus HOM05D004079 ORTHO05D005437 7.5e-06 56.6 89 33.7
AL1G31480 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 7.5e-06 56.6 89 31.5
AT1G18900 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 7.5e-06 56.6 89 31.5
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 7.5e-06 56.6 94 29.8
Rhsim12G0159600 Rhododendron simsii HOM05D004079 ORTHO05D005437 7.5e-06 56.6 89 31.5
Actinidia34976 Actinidia chinensis HOM05D004079 ORTHO05D005437 9.7e-06 56.2 89 34.8
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 9.7e-06 56.2 91 31.9
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 9.7e-06 56.2 91 31.9
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 9.7e-06 56.2 99 33.3
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 9.7e-06 56.2 89 33.7
TAR629G1274 Trochodendron aralioides HOM05D004079 ORTHO05D005437 9.7e-06 56.2 89 32.6


User provided reference genes

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