Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 0.0e+00 1085.9 537 100.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.3e-171 607.1 546 60.4
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 6.3e-161 571.6 550 57.8
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 3.4e-159 565.8 550 57.1
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 2.2e-158 563.1 514 59.3
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.4e-157 560.5 538 57.1
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 7.9e-156 554.7 547 56.7
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 6.7e-155 551.6 549 56.8
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 3.7e-153 545.8 476 61.1
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.4e-152 543.9 538 55.6
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.5e-151 540.4 550 54.9
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 8.5e-150 534.6 560 54.8
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 7.2e-149 531.6 548 54.6
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 1.6e-148 530.4 520 57.1
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.5e-146 523.1 540 55.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 4.3e-146 522.3 453 61.8
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.3e-145 520.8 555 54.2
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 9.1e-144 514.6 540 54.4
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.5e-143 513.8 540 54.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 3.8e-142 509.2 545 52.7
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.1e-141 507.7 614 48.2
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 4.4e-138 495.7 564 52.8
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 5.7e-138 495.4 547 52.3
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.8e-136 490.3 547 52.7
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 9.1e-136 488.0 522 51.3
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 5.9e-135 485.3 442 59.3
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.7e-134 483.8 448 59.2
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 1.5e-133 480.7 549 50.1
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.9e-133 480.3 557 49.4
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.5e-133 479.9 551 51.0
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 2.1e-132 476.9 498 54.0
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 2.1e-132 476.9 568 48.8
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.7e-132 476.5 533 51.2
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.8e-131 473.8 492 52.8
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 3.3e-130 469.5 434 59.0
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 5.7e-130 468.8 566 50.0
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 5.7e-130 468.8 455 57.1
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.3e-129 467.6 461 55.7
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.8e-128 463.8 417 60.0
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.4e-128 463.4 544 51.8
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 2.4e-128 463.4 494 53.6
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 2.4e-128 463.4 655 44.7
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 2.4e-128 463.4 419 58.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.1e-128 463.0 691 42.1
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 4.1e-128 462.6 465 55.5
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 5.3e-128 462.2 553 51.0
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 6.5e-126 455.3 452 56.4
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 8.5e-126 454.9 466 53.9
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.9e-125 453.8 552 50.2
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 1.4e-123 447.6 537 50.8
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.8e-123 447.2 566 48.2
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.8e-123 447.2 550 49.8
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.8e-123 447.2 550 49.8
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 3.0e-123 446.4 460 56.7
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.8e-123 445.3 522 49.8
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 8.8e-123 444.9 526 49.8
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.2e-122 444.5 534 49.1
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.2e-122 444.5 550 49.8
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.4e-122 443.0 539 48.1
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 9.8e-122 441.4 448 54.5
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.3e-121 441.0 426 57.5
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 8.3e-121 438.3 532 50.0
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 5.4e-120 435.6 535 48.6
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 3.5e-119 433.0 462 54.5
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 2.9e-118 429.9 552 48.9
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 3.8e-118 429.5 544 47.8
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 3.8e-118 429.5 433 56.6
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.9e-117 427.2 479 52.6
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 5.5e-117 425.6 378 62.2
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.7e-116 422.5 521 50.3
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 4.0e-115 419.5 486 51.6
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.7e-113 414.1 428 53.7
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 4.9e-113 412.5 417 54.4
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.4e-112 411.0 477 49.9
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 7.7e-111 405.2 539 45.8
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 3.3e-109 399.8 461 51.2
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 4.3e-109 399.4 557 45.8
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.1e-108 395.6 405 52.3
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 2.3e-107 393.7 508 45.7
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 3.0e-107 393.3 541 45.5
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 8.9e-107 391.7 492 47.0
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 7.5e-106 388.7 416 51.0
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 7.0e-104 382.1 481 47.2
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 2.0e-103 380.6 443 49.2
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.0e-103 380.6 535 43.6
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.0e-103 380.6 350 57.7
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.7e-102 377.5 510 45.3
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 8.9e-99 365.2 392 53.3
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.2e-98 364.8 526 45.2
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.3e-97 361.3 525 43.0
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 4.9e-97 359.4 522 45.8
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 8.3e-97 358.6 551 41.9
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.6e-95 354.4 526 43.2
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 3.0e-94 350.1 391 51.2
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.0e-94 350.1 496 44.6
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 6.6e-94 349.0 418 47.8
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.1e-93 348.2 377 50.7
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 4.3e-93 346.3 493 45.4
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 4.3e-93 346.3 487 42.7
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 9.5e-93 345.1 295 58.0
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.6e-92 344.4 503 43.1
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.1e-92 344.0 354 54.2
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 2.1e-92 344.0 501 43.5
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.6e-92 343.2 348 55.7
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 4.7e-92 342.8 502 43.4
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 5.2e-91 339.3 398 49.0
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 5.2e-91 339.3 398 49.0
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 8.3e-89 332.0 438 47.0
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.4e-88 330.5 376 50.5
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 5.4e-88 329.3 359 50.7
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 4.6e-87 326.2 455 45.1
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 2.3e-86 323.9 358 50.8
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 5.1e-86 322.8 360 50.3
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 8.6e-86 322.0 407 47.9
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 1.9e-85 320.9 394 48.2
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.3e-85 320.1 394 48.2
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 5.6e-85 319.3 401 48.1
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 3.6e-84 316.6 387 48.3
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 8.1e-84 315.5 386 48.2
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 8.1e-84 315.5 386 48.2
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.1e-83 315.1 424 45.3
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.3e-83 313.9 355 45.9
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.0e-83 313.2 476 41.8
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 5.2e-83 312.8 363 49.3
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 8.9e-83 312.0 502 41.2
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.1e-80 305.1 463 41.5
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 5.4e-80 302.8 379 45.9
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.6e-79 301.2 264 61.0
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 5.6e-77 292.7 276 58.3
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.0e-75 286.6 347 48.7
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.9e-73 280.4 283 55.8
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 4.9e-73 279.6 231 63.2
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 4.6e-71 273.1 354 46.0
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.9e-64 251.1 402 38.6
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 2.1e-63 247.7 320 44.7
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 5.3e-51 206.5 191 57.6
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.2e-50 205.3 235 50.6
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 4.5e-50 203.4 595 32.4
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.9e-48 198.0 304 40.5
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 5.1e-46 189.9 259 45.2
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 9.0e-43 179.1 172 58.1
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 6.5e-41 172.9 362 36.5
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.8e-36 157.5 412 32.0
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 6.9e-35 152.9 202 48.5
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 1.0e-30 139.0 217 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.4e-27 127.9 203 37.4
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.2e-26 125.6 217 38.7
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.7e-25 121.7 356 29.8
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.9e-25 120.9 151 43.0
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.9e-08 65.1 38 78.9
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 5.5e-08 63.5 78 43.6
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 8.0e-07 59.7 87 39.1
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 6.8e-06 56.6 51 51.0


User provided reference genes

Program Settings