Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 0.0e+00 1413.3 715 100.0
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 2.4e-232 809.3 658 63.5
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 1.4e-213 746.9 680 58.4
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 5.7e-210 734.9 644 59.9
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 3.1e-208 729.2 670 58.7
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 4.1e-208 728.8 606 62.5
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 6.9e-208 728.0 666 58.3
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.9e-206 722.6 601 60.6
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 5.5e-205 718.4 657 57.4
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 8.8e-203 711.1 598 61.9
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.1e-202 710.7 637 58.2
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 4.1e-200 702.2 682 54.0
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 5.3e-200 701.8 644 57.0
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.6e-199 700.3 674 56.8
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 2.5e-197 693.0 631 58.0
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.1e-196 688.3 639 56.2
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 8.0e-196 688.0 662 53.3
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.4e-195 687.2 641 56.6
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.5e-194 683.7 676 55.9
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.2e-193 679.9 691 53.5
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 2.8e-193 679.5 621 58.6
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 3.7e-193 679.1 645 56.4
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 2.7e-191 672.9 671 53.9
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 4.5e-191 672.2 606 57.3
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 4.2e-189 665.6 591 58.4
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 7.2e-189 664.8 592 58.8
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 1.2e-188 664.1 605 58.5
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.6e-186 656.4 700 53.6
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.7e-185 653.7 611 56.5
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.4e-184 650.6 656 55.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.4e-184 650.6 587 58.9
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.8e-184 650.2 652 54.6
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.3e-182 644.0 646 53.7
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 2.3e-182 643.3 589 57.7
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.5e-181 640.6 679 52.9
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.0e-179 632.5 568 58.3
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 5.2e-179 632.1 647 52.6
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 7.5e-178 628.2 655 53.4
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 2.4e-176 623.2 643 52.7
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.1e-173 614.4 682 51.6
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 1.4e-171 607.4 524 59.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 8.9e-171 604.7 648 53.5
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 8.3e-169 598.2 588 53.2
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 4.1e-168 595.9 552 54.0
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 2.3e-166 590.1 595 52.4
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 5.6e-165 585.5 600 51.8
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 2.8e-164 583.2 595 51.8
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 8.0e-164 581.6 600 54.8
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 1.4e-163 580.9 514 58.6
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.0e-162 577.0 498 59.8
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 3.0e-158 563.1 560 51.8
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.5e-157 560.1 628 47.9
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 2.0e-154 550.4 453 60.3
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.7e-153 547.4 643 46.3
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 1.1e-152 544.7 491 56.6
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 3.5e-151 539.7 467 60.8
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 5.1e-150 535.8 684 44.9
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.3e-149 532.7 560 51.8
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.7e-148 529.3 456 58.8
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.5e-146 524.2 515 54.6
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.6e-146 523.5 414 62.3
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 4.4e-146 522.7 649 47.1
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 6.4e-145 518.8 456 58.1
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 8.4e-145 518.5 663 46.3
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 7.1e-144 515.4 522 52.5
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 9.2e-144 515.0 467 56.1
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 3.9e-142 509.6 560 48.0
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.5e-141 507.7 560 48.2
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 7.3e-141 505.4 595 45.5
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.8e-139 500.7 602 45.7
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 3.1e-139 500.0 612 45.9
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 3.1e-139 500.0 612 45.9
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.5e-138 497.7 602 46.5
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 9.9e-138 495.0 600 45.7
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 9.9e-138 495.0 554 47.1
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 6.4e-137 492.3 424 58.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 5.4e-136 489.2 640 42.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 7.1e-136 488.8 630 44.8
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 1.6e-135 487.6 630 44.9
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 2.1e-135 487.3 509 50.5
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.5e-133 481.1 414 58.7
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 3.3e-133 479.9 403 57.1
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 4.0e-131 473.0 443 58.5
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 5.4e-128 462.6 628 43.0
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.0e-126 458.4 503 49.1
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 3.3e-125 453.4 467 51.6
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 3.4e-122 443.4 606 41.6
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 3.2e-120 436.8 455 54.5
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 5.1e-118 429.5 529 45.0
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.5e-117 427.9 565 41.8
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 3.3e-117 426.8 539 45.6
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 8.2e-116 422.2 469 52.9
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 2.0e-114 417.5 569 44.8
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 1.7e-113 414.5 442 53.2
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 7.7e-106 389.0 348 56.0
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 1.3e-100 371.7 328 56.4
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.6e-98 364.0 301 59.1
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 4.2e-96 356.7 297 59.6
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.5e-85 321.6 432 43.3
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 8.0e-79 299.3 265 54.7
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 7.5e-77 292.7 363 49.6
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 5.2e-62 243.4 319 49.5
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 5.0e-57 226.9 223 57.4
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.0e-49 202.6 253 53.4
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.2e-47 195.7 193 56.5
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 1.3e-44 185.7 146 68.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 4.9e-44 183.7 143 69.2
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 2.1e-42 178.3 263 44.9
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 2.4e-27 128.3 256 28.9
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 1.8e-22 112.1 156 47.4
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 4.0e-22 110.9 287 29.6
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 2.6e-21 108.2 81 67.9
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.1e-15 86.7 59 66.1
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 4.9e-12 77.4 68 55.9
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 4.2e-11 74.3 54 55.6
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.1e-06 59.7 43 65.1


User provided reference genes

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