Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 6.4e-29 130.2 71 100.0
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.2e-16 87.0 63 73.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.2e-16 87.0 63 73.0
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-15 85.9 63 77.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.3e-15 85.1 63 74.6
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.3e-15 85.1 65 73.8
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.0e-15 84.3 63 74.6
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 8.9e-15 83.2 68 66.2
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 63 68.3
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.2e-14 82.8 63 71.4
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-14 82.8 64 71.9
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 63 68.3
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 63 68.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.2e-14 82.8 63 73.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-14 82.0 66 68.2
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.4e-14 80.9 63 76.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.4e-14 80.9 63 76.2
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.4e-14 80.9 63 71.4
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.4e-14 80.9 63 71.4
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.5e-14 80.1 63 71.4
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.5e-14 80.1 63 69.8
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.3e-13 79.3 63 69.8
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.2e-13 78.6 64 70.3
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.2e-13 78.6 67 65.7
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.2e-13 78.6 63 68.3
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.7e-13 77.8 67 70.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 3.7e-13 77.8 62 67.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 4.9e-13 77.4 63 68.3
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 4.9e-13 77.4 63 66.7
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 4.9e-13 77.4 65 66.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.4e-13 77.0 67 65.7
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.1e-12 76.3 66 65.2
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.1e-12 76.3 65 66.2
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.9e-12 75.5 64 68.8
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.4e-12 73.9 74 62.2
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 7.1e-12 73.6 60 66.7
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.2e-11 72.8 63 65.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-11 72.4 62 66.1
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.1e-11 72.0 74 60.8
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.1e-11 72.0 74 60.8
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 2.7e-11 71.6 66 69.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.5e-11 71.2 53 75.5
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.5e-11 71.2 64 67.2
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 4.6e-11 70.9 63 63.5
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.6e-11 70.9 55 72.7
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 1.3e-10 69.3 72 56.9
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.3e-10 68.6 65 61.5
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 3.0e-10 68.2 59 61.0
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.0e-10 68.2 79 54.4
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 3.9e-10 67.8 72 56.9
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 3.9e-10 67.8 64 65.6
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.1e-10 67.4 67 58.2
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 5.1e-10 67.4 65 61.5
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.1e-10 67.4 65 64.6
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 6.6e-10 67.0 79 54.4
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 8.6e-10 66.6 79 53.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.6e-10 66.6 65 60.0
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 1.1e-09 66.2 74 55.4
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 1.5e-09 65.9 75 54.7
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 1.5e-09 65.9 75 54.7
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.5e-09 65.9 83 51.8
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.5e-09 65.9 70 60.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.5e-09 65.9 70 60.0
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 1.9e-09 65.5 76 53.9
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 4.3e-09 64.3 72 55.6
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 5.6e-09 63.9 73 57.5
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-08 62.8 40 75.0
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.8e-08 61.6 41 75.6
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 3.6e-08 61.2 67 55.2
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 3.6e-08 61.2 71 56.3
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 4.7e-08 60.8 42 71.4
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 4.7e-08 60.8 42 71.4
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 6.2e-08 60.5 79 49.4
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 6.2e-08 60.5 60 58.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.4e-07 58.5 61 59.0
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 2.4e-07 58.5 66 59.1
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 3.1e-07 58.2 42 69.0
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.0e-07 57.8 54 59.3
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.2e-07 57.4 55 61.8
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 6.8e-07 57.0 54 59.3
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.8e-07 57.0 61 57.4
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 8.9e-07 56.6 58 53.4
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-07 56.6 58 53.4
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-07 56.6 58 53.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 8.9e-07 56.6 58 53.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.9e-07 56.6 57 56.1
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.2e-06 56.2 58 53.4
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.2e-06 56.2 54 55.6
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.2e-06 56.2 61 50.8
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-06 56.2 54 57.4
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.2e-06 56.2 54 57.4
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.2e-06 56.2 56 58.9
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.5e-06 55.8 54 55.6
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.5e-06 55.8 54 57.4
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-06 55.5 60 56.7
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-06 55.5 58 50.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.6e-06 55.1 61 50.8
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.6e-06 55.1 60 56.7
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.6e-06 55.1 58 51.7
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.6e-06 55.1 54 55.6
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 2.6e-06 55.1 54 53.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-06 55.1 56 57.1
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 2.6e-06 55.1 56 57.1
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.4e-06 54.7 60 53.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.4e-06 54.7 63 55.6
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 3.4e-06 54.7 59 50.8
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.4e-06 54.7 54 53.7
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 4.4e-06 54.3 60 58.3
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 5.8e-06 53.9 68 51.5
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.8e-06 53.9 60 56.7
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.8e-06 53.9 61 55.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.8e-06 53.9 58 50.0
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.8e-06 53.9 58 50.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 5.8e-06 53.9 58 50.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.8e-06 53.9 60 56.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 5.8e-06 53.9 54 55.6
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 5.8e-06 53.9 58 53.4
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.8e-06 53.9 58 51.7
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 7.6e-06 53.5 57 54.4
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.9e-06 53.1 60 55.0
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 9.9e-06 53.1 58 50.0
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.9e-06 53.1 54 55.6


User provided reference genes

Program Settings