Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.4e-136 489.6 249 100.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.1e-78 295.8 248 65.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 5.2e-78 295.0 227 68.7
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.0e-77 293.1 209 74.2
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 5.8e-77 291.6 230 67.0
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.9e-77 290.8 213 73.2
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 8.4e-76 287.7 256 62.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.1e-75 287.3 226 67.7
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 3.2e-75 285.8 227 67.0
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 9.2e-75 284.3 227 66.1
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.1e-74 283.1 224 67.4
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.6e-74 282.0 229 66.8
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 7.8e-74 281.2 221 64.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.3e-73 279.6 225 67.6
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.0e-73 279.3 225 68.0
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.9e-73 278.9 245 62.9
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 5.1e-73 278.5 225 67.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 5.1e-73 278.5 278 59.4
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 6.6e-73 278.1 251 62.2
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.5e-72 276.2 227 65.2
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 3.3e-72 275.8 228 65.4
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.7e-71 271.9 221 67.9
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 6.2e-71 271.6 234 62.4
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 8.1e-71 271.2 218 66.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.4e-70 270.4 228 64.9
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.8e-70 270.0 218 67.9
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.2e-70 268.5 212 66.5
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 6.9e-70 268.1 221 67.4
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.2e-69 267.3 234 62.8
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.2e-69 267.3 229 62.4
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.5e-69 266.9 213 67.1
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.5e-69 266.9 234 63.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.5e-69 266.9 221 65.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.5e-69 266.9 226 63.3
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.0e-69 266.5 215 67.4
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 4.4e-69 265.4 211 66.4
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 4.4e-69 265.4 237 61.6
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 5.8e-69 265.0 234 62.8
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 5.8e-69 265.0 234 62.4
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 7.6e-69 264.6 241 61.0
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 9.9e-69 264.2 152 82.9
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 9.9e-69 264.2 214 65.9
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.3e-68 263.8 240 62.5
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.7e-68 263.5 240 61.7
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.7e-68 263.5 224 62.9
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.7e-68 263.5 241 60.6
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.9e-68 262.7 226 61.1
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.9e-68 262.7 231 60.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 6.4e-68 261.5 218 63.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.1e-67 260.8 233 59.7
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.2e-67 259.2 238 60.5
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 4.2e-67 258.8 157 79.6
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 9.3e-67 257.7 248 58.9
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 7.8e-66 254.6 233 59.2
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.3e-65 253.8 221 62.9
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 3.9e-65 252.3 239 58.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.1e-65 251.9 237 57.0
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 5.1e-65 251.9 241 58.5
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 5.1e-65 251.9 241 58.5
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 6.6e-65 251.5 182 68.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.1e-64 250.8 233 61.8
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.1e-64 250.8 243 57.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.1e-64 250.8 207 63.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.9e-64 250.0 221 60.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.9e-64 250.0 238 57.1
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.5e-64 249.6 231 59.7
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.5e-64 249.6 215 63.3
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.3e-64 249.2 224 61.2
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.3e-64 249.2 228 58.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.3e-64 249.2 221 64.3
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 3.3e-64 249.2 229 59.8
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.3e-64 248.8 230 60.9
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 7.3e-64 248.1 227 59.5
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 7.3e-64 248.1 234 59.0
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 7.3e-64 248.1 227 59.5
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 7.3e-64 248.1 233 59.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.3e-63 247.3 233 58.8
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 1.3e-63 247.3 227 59.5
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.6e-63 246.9 223 61.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.1e-63 246.5 225 59.6
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.8e-63 246.1 234 58.5
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 6.2e-63 245.0 231 58.9
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 6.2e-63 245.0 231 58.9
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 6.2e-63 245.0 241 56.0
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.2e-63 245.0 241 56.4
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 8.1e-63 244.6 261 54.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.1e-62 244.2 242 55.0
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.1e-62 244.2 234 57.7
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.8e-62 243.4 255 53.3
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.1e-62 242.7 152 77.0
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.0e-61 240.0 208 66.3
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 6.4e-60 235.0 208 60.6
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.4e-59 233.0 229 57.2
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 3.2e-59 232.6 222 53.6
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 4.2e-59 232.3 206 62.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.5e-58 229.2 271 50.2
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.6e-58 228.8 205 60.5
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.6e-58 228.8 223 52.9
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 7.9e-58 228.0 152 69.1
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.0e-57 226.1 152 68.4
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.5e-56 223.0 197 57.9
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 3.3e-56 222.6 220 59.1
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 6.9e-54 214.9 153 68.6
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.3e-52 210.7 222 55.9
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 6.4e-52 208.4 138 73.2
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.4e-52 208.0 225 54.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 7.9e-50 201.4 160 62.5
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.9e-49 199.1 179 61.5
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 2.5e-43 179.9 132 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 3.2e-43 179.5 131 64.9
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.6e-42 177.2 235 44.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.3e-41 173.3 177 53.1
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.9e-40 170.2 160 58.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.5e-40 169.9 136 57.4
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.5e-40 169.9 113 69.9
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.2e-39 164.9 165 53.3
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 7.6e-37 158.3 131 55.7
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.0e-36 155.6 175 50.3
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.1e-32 144.4 95 78.9
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 4.3e-32 142.5 143 55.2
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 4.1e-30 136.0 74 83.8
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.1e-30 136.0 93 73.1
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 4.1e-22 109.4 54 87.0
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.7e-20 104.0 118 53.4
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 5.0e-20 102.4 75 68.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.9e-19 100.5 107 57.9
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 4.2e-19 99.4 135 39.3
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 8.0e-18 95.1 226 33.2
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.3e-17 93.6 98 53.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.7e-16 88.2 54 75.9
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.7e-10 70.1 36 86.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 2.6e-08 63.5 126 28.6


User provided reference genes

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