Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.3e-95 351.3 174 100.0
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 3.1e-69 265.4 148 78.4
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 5.0e-67 258.1 149 76.5
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 7.2e-66 254.2 146 74.7
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.6e-65 253.1 146 75.3
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.7e-65 252.3 164 72.0
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 4.6e-65 251.5 170 67.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 6.1e-65 251.1 146 74.7
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 6.1e-65 251.1 169 68.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 7.9e-65 250.8 170 65.9
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.3e-64 250.0 149 71.8
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.8e-64 249.6 149 73.2
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 6.7e-64 247.7 170 65.9
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 6.7e-64 247.7 170 65.9
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.1e-63 246.9 146 72.6
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.5e-63 246.5 170 66.5
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 2.5e-63 245.7 168 66.7
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.5e-63 245.7 156 70.5
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 2.5e-63 245.7 140 76.4
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.3e-63 245.4 167 68.9
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 4.3e-63 245.0 167 70.7
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.3e-62 243.4 146 73.3
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.7e-62 241.9 149 71.1
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.8e-62 241.5 146 74.0
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 4.8e-62 241.5 143 73.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.4e-61 239.2 143 72.7
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.1e-61 238.8 146 69.2
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.1e-61 238.4 153 68.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.3e-61 238.0 146 71.2
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.9e-61 237.7 146 69.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 9.1e-61 237.3 148 72.3
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.2e-60 236.9 148 70.9
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.5e-60 236.5 149 71.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 3.4e-60 235.3 148 73.0
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 4.5e-60 235.0 172 66.3
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 5.9e-60 234.6 148 69.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 7.7e-60 234.2 146 70.5
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.3e-59 233.4 146 73.3
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.3e-59 233.4 147 70.7
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.8e-59 231.9 146 68.5
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 8.5e-59 230.7 146 71.2
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.1e-58 230.3 147 70.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.4e-58 229.9 147 68.7
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.4e-58 229.9 144 72.2
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.5e-58 229.2 150 67.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.2e-58 228.8 146 70.5
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.2e-58 228.8 147 68.7
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 4.2e-58 228.4 148 67.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 9.4e-58 227.3 146 69.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.2e-57 226.9 142 72.5
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.2e-57 226.9 146 69.9
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.2e-57 226.9 146 69.9
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.2e-57 226.9 146 69.9
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.6e-57 226.5 146 66.4
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.6e-57 226.5 145 66.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.1e-57 226.1 146 69.9
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.1e-57 226.1 139 70.5
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 3.6e-57 225.3 143 69.9
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.7e-57 224.9 146 67.8
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.1e-57 224.6 137 71.5
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.0e-56 223.8 146 65.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.0e-56 223.8 152 66.4
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.0e-56 223.8 152 66.4
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.0e-56 223.8 146 67.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.4e-56 223.4 147 65.3
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.4e-56 223.4 146 67.8
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.8e-56 223.0 149 66.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 3.9e-56 221.9 144 65.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 5.1e-56 221.5 146 66.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 6.7e-56 221.1 136 70.6
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 6.7e-56 221.1 152 66.4
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 8.8e-56 220.7 139 67.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.5e-55 219.9 152 63.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 2.0e-55 219.5 146 67.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 2.0e-55 219.5 149 64.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.6e-55 219.2 177 59.3
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 4.4e-55 218.4 136 69.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 4.4e-55 218.4 145 65.5
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 7.4e-55 217.6 145 62.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 7.4e-55 217.6 146 67.1
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.3e-54 216.9 136 68.4
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.7e-54 216.5 145 66.2
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.7e-54 216.5 165 59.4
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.8e-54 215.7 137 69.3
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.8e-54 215.7 143 67.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 2.8e-54 215.7 136 68.4
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 3.7e-54 215.3 165 60.6
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.8e-54 214.9 136 66.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 6.3e-54 214.5 136 67.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.4e-53 213.4 136 67.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.8e-53 213.0 140 67.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.1e-53 212.2 126 74.6
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.3e-53 211.5 149 63.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.0e-52 209.5 144 64.6
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.0e-52 209.5 144 64.6
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.0e-52 209.5 144 64.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.6e-52 209.1 146 61.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 2.6e-52 209.1 143 63.6
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.6e-52 209.1 152 61.2
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 7.7e-52 207.6 149 58.4
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 7.7e-52 207.6 146 62.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.0e-51 207.2 144 63.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.7e-51 206.5 142 64.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.9e-51 205.7 148 62.8
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 5.0e-51 204.9 140 63.6
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-50 203.0 144 61.8
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.8e-48 196.4 147 59.2
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.0e-47 193.0 138 60.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.4e-47 191.0 163 53.4
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.8e-45 186.4 140 56.4
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.5e-44 181.8 137 56.2
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 7.7e-44 181.0 140 57.1
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-43 180.3 127 66.1
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.9e-42 176.4 152 55.3
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 9.4e-42 174.1 136 54.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-41 173.3 127 64.6
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.1e-41 171.4 99 73.7
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.2e-38 162.9 151 47.0
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.0e-35 154.1 139 49.6
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-33 146.0 144 50.7
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 6.8e-32 141.4 140 47.1
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.7e-30 136.7 140 45.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.8e-30 135.2 140 44.3
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.3e-30 134.4 134 46.3
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.9e-27 125.9 76 67.1
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.5e-27 124.8 133 44.4
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 8.6e-27 124.4 101 56.4
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 5.2e-24 115.2 143 43.4
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.6e-20 103.6 68 63.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.0e-19 100.9 128 35.2
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 3.8e-19 99.0 116 43.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.8e-19 99.0 116 43.1
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.5e-18 96.3 116 41.4
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.8e-16 88.2 136 37.5
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.8e-15 85.1 79 54.4
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.2e-14 83.2 77 53.2
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 7.0e-13 78.2 152 31.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 7.0e-13 78.2 73 53.4
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.6e-12 77.0 55 63.6
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-10 68.9 39 74.4
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.1e-09 66.6 142 30.3
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 8.0e-09 64.7 44 61.4
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.1e-08 62.8 111 33.3
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 1.5e-07 60.5 127 29.9
SGA_v2.0_scaffold226G43143 Striga asiatica HOM05D000344 ORTHO05D000934 9.8e-07 57.8 49 61.2
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 4.9e-06 55.5 70 35.7


User provided reference genes

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