Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 2.7e-67 258.5 126 100.0
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 8.6e-53 210.3 125 78.4
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.2e-51 206.5 125 77.6
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 3.6e-51 204.9 125 76.0
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 3.1e-50 201.8 125 78.4
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 8.9e-50 200.3 125 76.8
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 1.5e-49 199.5 125 76.8
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 2.9e-48 195.3 125 73.6
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 4.9e-48 194.5 122 74.6
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 4.9e-48 194.5 122 74.6
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 1.1e-47 193.4 124 72.6
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.1e-47 193.4 124 74.2
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.1e-47 193.4 124 74.2
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.4e-47 193.0 120 75.8
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 1.4e-47 193.0 122 73.8
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.9e-47 192.6 125 72.0
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.4e-47 192.2 124 73.4
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 2.4e-47 192.2 125 74.4
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 9.2e-47 190.3 124 74.2
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 9.2e-47 190.3 124 75.0
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 9.2e-47 190.3 124 72.6
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 2.7e-46 188.7 124 73.4
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 3.5e-46 188.3 126 73.8
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 7.8e-46 187.2 125 71.2
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 7.8e-46 187.2 125 71.2
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 1.3e-45 186.4 124 73.4
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 8.6e-45 183.7 123 73.2
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.1e-44 183.3 121 73.6
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 1.9e-44 182.6 125 70.4
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 5.6e-44 181.0 125 71.2
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 7.3e-44 180.6 125 69.6
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 7.3e-44 180.6 125 69.6
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 9.5e-44 180.3 124 66.9
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 9.5e-44 180.3 121 70.2
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 1.2e-43 179.9 124 69.4
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.6e-43 179.5 125 66.4
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 2.1e-43 179.1 125 66.4
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 2.8e-43 178.7 123 68.3
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 4.7e-43 177.9 125 68.8
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 4.7e-43 177.9 125 67.2
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 8.1e-43 177.2 121 66.9
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 1.1e-42 176.8 122 68.0
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 1.4e-42 176.4 125 64.8
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 2.3e-42 175.6 125 68.8
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 2.3e-42 175.6 123 69.1
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 4.0e-42 174.9 125 67.2
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 4.0e-42 174.9 120 70.0
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 4.0e-42 174.9 123 65.9
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 5.2e-42 174.5 124 68.5
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 5.2e-42 174.5 126 67.5
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 5.2e-42 174.5 124 68.5
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 6.8e-42 174.1 124 68.5
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 8.9e-42 173.7 123 68.3
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 1.2e-41 173.3 123 66.7
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 1.5e-41 172.9 121 66.1
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 1.5e-41 172.9 121 66.9
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 1.5e-41 172.9 123 69.1
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 1.5e-41 172.9 120 70.0
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 2.0e-41 172.6 125 66.4
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 2.0e-41 172.6 125 67.2
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 2.6e-41 172.2 123 65.0
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 2.6e-41 172.2 122 66.4
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 4.4e-41 171.4 120 69.2
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 4.4e-41 171.4 122 65.6
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 4.4e-41 171.4 120 69.2
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 9.8e-41 170.2 122 63.1
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 1.3e-40 169.9 120 65.8
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 1.7e-40 169.5 123 65.0
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 6.4e-40 167.5 126 65.1
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 6.4e-40 167.5 130 62.3
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 8.3e-40 167.2 119 69.7
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 8.3e-40 167.2 129 62.8
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 1.1e-39 166.8 124 66.9
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 1.4e-39 166.4 121 63.6
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 1.9e-39 166.0 119 68.9
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.9e-39 166.0 125 60.0
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 3.2e-39 165.2 123 61.8
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 3.2e-39 165.2 126 62.7
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 3.2e-39 165.2 125 60.0
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 5.4e-39 164.5 124 62.9
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 2.1e-38 162.5 123 61.8
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 2.7e-38 162.2 98 78.6
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 2.7e-38 162.2 125 64.0
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 4.6e-38 161.4 123 63.4
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 4.6e-38 161.4 123 63.4
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 6.0e-38 161.0 123 63.4
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 6.0e-38 161.0 123 62.6
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 6.0e-38 161.0 123 62.6
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 1.3e-37 159.8 123 62.6
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 1.7e-37 159.5 125 64.0
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 1.7e-37 159.5 123 63.4
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 3.0e-37 158.7 125 64.0
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 3.0e-37 158.7 123 61.0
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 5.1e-37 157.9 116 65.5
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 5.1e-37 157.9 123 62.6
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 5.1e-37 157.9 123 62.6
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 1.1e-36 156.8 123 61.0
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 1.5e-36 156.4 124 61.3
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 1.9e-36 156.0 125 61.6
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 2.5e-36 155.6 122 62.3
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 9.5e-36 153.7 127 57.5
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 1.2e-35 153.3 122 60.7
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 1.2e-35 153.3 122 60.7
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 1.6e-35 152.9 121 61.2
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 1.6e-35 152.9 124 57.3
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 3.6e-35 151.8 123 58.5
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 6.2e-35 151.0 124 58.1
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.1e-34 150.2 124 60.5
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 2.3e-34 149.1 123 61.0
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.2e-32 142.5 125 54.4
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 2.2e-32 142.5 121 54.5
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 1.0e-29 133.7 125 53.6
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 3.6e-27 125.2 77 72.7
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 4.7e-27 124.8 93 63.4
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 5.2e-26 121.3 125 50.4
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 7.6e-25 117.5 125 48.8
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 1.7e-24 116.3 96 62.5
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 6.4e-24 114.4 79 67.1
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.9e-23 112.8 75 66.7
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 1.9e-23 112.8 115 51.3
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 1.3e-21 106.7 115 49.6
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 1.6e-19 99.8 120 47.5
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 2.8e-19 99.0 63 73.0
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 1.5e-17 93.2 124 41.9
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 1.7e-16 89.7 62 66.1
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 1.9e-15 86.3 69 59.4
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 1.9e-15 86.3 72 58.3
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 1.6e-14 83.2 77 46.8
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 1.0e-13 80.5 118 39.8
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 3.0e-13 79.0 75 52.0
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 1.5e-12 76.6 76 44.7
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 4.3e-12 75.1 122 39.3
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 2.8e-11 72.4 111 39.6
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 1.4e-10 70.1 108 33.3
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 5.3e-10 68.2 49 69.4
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 5.8e-09 64.7 78 39.7
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 5.8e-09 64.7 75 41.3
PRCOL_00003291 Prasinoderma coloniale HOM05D005465 ORTHO05D006612 7.1e-07 57.8 68 47.1
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 7.1e-07 57.8 99 36.4


User provided reference genes

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