Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 1.5e-56 222.6 112 100.0
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 2.3e-17 92.4 102 55.9
Potri.004G119600 Populus trichocarpa HOM05D007413 ORTHO05D009357 5.2e-17 91.3 88 59.1
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 5.2e-17 91.3 102 55.9
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 6.7e-17 90.9 107 56.1
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 6.7e-17 90.9 96 55.2
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 2.0e-16 89.4 107 55.1
Migut.K01283 Erythranthe guttata HOM05D007413 ORTHO05D009357 3.3e-16 88.6 121 48.8
Hma1.2p1_0481F.1_g162070 Hydrangea macrophylla HOM05D007413 ORTHO05D009357 3.3e-16 88.6 110 50.0
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 3.3e-16 88.6 102 53.9
Sabra17G0082000 Salix brachista HOM05D007413 ORTHO05D009357 4.4e-16 88.2 102 52.9
CAN.G206.219 Capsicum annuum HOM05D007413 ORTHO05D009357 7.5e-16 87.4 98 55.1
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.7e-15 86.3 89 57.3
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 3.7e-15 85.1 108 53.7
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 4.8e-15 84.7 98 54.1
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 8.2e-15 84.0 92 51.1
Aqoxy3G03598 Aquilegia oxysepala HOM05D007413 ORTHO05D009357 1.4e-14 83.2 106 45.3
Cfa007655 Carpinus fangiana HOM05D007413 ORTHO05D009357 2.4e-14 82.4 88 56.8
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 7.0e-14 80.9 112 45.5
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 1.6e-13 79.7 113 47.8
Manes.02G054200 Manihot esculenta HOM05D007413 ORTHO05D009357 1.6e-13 79.7 98 51.0
Nn3g17420 Nelumbo nucifera HOM05D007413 ORTHO05D009357 2.7e-13 79.0 106 47.2
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 5.9e-13 77.8 94 47.9
PGSC0003DMG400025144 Solanum tuberosum HOM05D007413 ORTHO05D009357 7.7e-13 77.4 106 45.3
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 1.0e-12 77.0 120 46.7
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 1.3e-12 76.6 54 61.1
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 1.3e-12 76.6 55 69.1
Oeu010247.1 Olea europaea HOM05D007413 ORTHO05D009357 1.7e-12 76.3 100 47.0
Sopen02g016170 Solanum pennellii HOM05D007413 ORTHO05D009357 1.7e-12 76.3 108 44.4
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 1.7e-12 76.3 93 43.0
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 2.2e-12 75.9 97 45.4
Solyc02g066970.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 3.8e-12 75.1 106 45.3
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 5.0e-12 74.7 106 44.3
MD09G1064600 Malus domestica HOM05D007413 ORTHO05D009357 8.5e-12 73.9 106 45.3
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 1.1e-11 73.6 81 53.1
CiPaw.03G089400 Carya illinoinensis HOM05D007413 ORTHO05D009357 1.5e-11 73.2 94 50.0
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 1.9e-11 72.8 74 50.0
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.9e-11 72.8 74 50.0
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.9e-11 72.8 74 50.0
TWI34G0597 Tripterygium wilfordii HOM05D007413 ORTHO05D009357 1.9e-11 72.8 93 43.0
unitig_62.g23378 Utricularia gibba HOM05D007413 ORTHO05D009357 3.2e-11 72.0 103 42.7
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 5.5e-11 71.2 122 41.0
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 5.5e-11 71.2 62 56.5
Actinidia26249 Actinidia chinensis HOM05D007413 ORTHO05D009357 7.2e-11 70.9 75 52.0
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 7.2e-11 70.9 88 46.6
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 9.4e-11 70.5 85 52.9
Lalb_Chr02g0158971 Lupinus albus HOM05D007413 ORTHO05D009357 9.4e-11 70.5 51 62.7
Nn4g23392 Nelumbo nucifera HOM05D007413 ORTHO05D009357 9.4e-11 70.5 107 40.2
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.2e-10 70.1 74 48.6
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 2.1e-10 69.3 90 50.0
Sed0019528 Sechium edule HOM05D007413 ORTHO05D009357 2.1e-10 69.3 93 47.3
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 2.1e-10 69.3 54 57.4
CAN.G398.10 Capsicum annuum HOM05D007413 ORTHO05D009357 3.6e-10 68.6 63 55.6
Psat1g067640 Pisum sativum HOM05D007413 ORTHO05D009357 3.6e-10 68.6 54 59.3
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 4.7e-10 68.2 60 58.3
Nitab4.5_0005916g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 4.7e-10 68.2 74 52.7
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 6.1e-10 67.8 111 42.3
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 6.1e-10 67.8 103 42.7
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 8.0e-10 67.4 111 42.3
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 8.0e-10 67.4 111 42.3
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 8.0e-10 67.4 111 42.3
SalBow1G0329 Salvia bowleyana HOM05D007413 ORTHO05D009357 8.0e-10 67.4 107 44.9
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 1.4e-09 66.6 92 45.7
CDE10G0699 Ceratophyllum demersum HOM05D007413 ORTHO05D009357 1.4e-09 66.6 86 44.2
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 1.4e-09 66.6 54 63.0
Duzib147G0133 Durio zibethinus HOM05D007413 ORTHO05D009357 2.3e-09 65.9 89 43.8
CSS0018963 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 3.0e-09 65.5 88 45.5
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 3.0e-09 65.5 102 41.2
Rhsim08G0074700 Rhododendron simsii HOM05D007413 ORTHO05D009357 3.0e-09 65.5 40 82.5
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 4.0e-09 65.1 64 50.0
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 5.2e-09 64.7 92 44.6
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 6.8e-09 64.3 74 48.6
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 8.8e-09 63.9 77 50.6
SGA_v2.0_scaffold52G19169 Striga asiatica HOM05D007413 ORTHO05D009357 8.8e-09 63.9 107 45.8
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 1.2e-08 63.5 102 39.2
CDE10G0216 Ceratophyllum demersum HOM05D001577 ORTHO05D008017 1.2e-08 63.5 87 43.7
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 1.5e-08 63.2 111 40.5
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 1.5e-08 63.2 111 40.5
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 1.5e-08 63.2 88 45.5
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 2.0e-08 62.8 98 41.8
DCAR_011043 Daucus carota HOM05D007413 ORTHO05D009357 2.6e-08 62.4 107 35.5
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 2.6e-08 62.4 88 45.5
Medtr6g015150 Medicago truncatula HOM05D007413 ORTHO05D009357 3.4e-08 62.0 50 58.0
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 4.4e-08 61.6 54 55.6
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.3e-07 60.1 103 35.9
Lalb_Chr21g0318381 Lupinus albus HOM05D007413 ORTHO05D009357 1.3e-07 60.1 55 58.2
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 1.7e-07 59.7 85 42.4
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 1.7e-07 59.7 88 43.2
MELO3C022028.2 Cucumis melo HOM05D007413 ORTHO05D009357 2.2e-07 59.3 95 38.9
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 2.2e-07 59.3 109 40.4
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 2.8e-07 58.9 99 41.4
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 3.7e-07 58.5 99 41.4
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 6.3e-07 57.8 84 38.1
Sc14g0006230 Simmondsia chinensis HOM05D007413 ORTHO05D009357 6.3e-07 57.8 82 45.1
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 8.3e-07 57.4 97 37.1
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 1.1e-06 57.0 103 39.8
TAR629G1767 Trochodendron aralioides HOM05D007413 ORTHO05D009357 1.4e-06 56.6 107 35.5
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 2.4e-06 55.8 92 41.3
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 4.1e-06 55.1 93 41.9
ATR0064G025 Amborella trichopoda HOM05D007413 ORTHO05D009357 4.1e-06 55.1 84 41.7
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 4.1e-06 55.1 64 48.4
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 5.4e-06 54.7 64 42.2
HPP92_023631 Vanilla planifolia HOM05D007413 ORTHO05D009357 9.1e-06 53.9 110 33.6


User provided reference genes

Program Settings