Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 1.1e-206 723.0 360 100.0
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 8.0e-120 434.5 251 78.5
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 3.0e-119 432.6 251 80.5
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 7.5e-118 427.9 252 76.2
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 1.3e-117 427.2 252 78.2
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 1.7e-117 426.8 251 76.9
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.2e-117 426.4 252 78.2
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 2.2e-117 426.4 249 78.7
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 9.1e-116 421.0 251 78.1
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 1.2e-115 420.6 251 75.3
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 2.0e-115 419.9 252 76.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.5e-115 419.1 251 76.5
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.3e-114 417.2 252 75.8
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 1.3e-114 417.2 251 74.9
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 2.3e-114 416.4 251 76.1
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.3e-114 416.4 251 76.5
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 2.3e-114 416.4 251 76.5
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 3.8e-114 415.6 251 76.1
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 5.0e-114 415.2 252 76.6
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 5.0e-114 415.2 252 75.4
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 5.0e-114 415.2 251 74.1
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 8.6e-114 414.5 251 76.5
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.1e-113 414.1 252 75.4
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 1.1e-113 414.1 251 75.3
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 1.1e-113 414.1 252 75.0
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 1.9e-113 413.3 252 75.0
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 2.5e-113 412.9 252 75.0
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 1.6e-112 410.2 252 75.0
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 1.6e-112 410.2 250 74.0
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 2.8e-112 409.5 251 73.3
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 3.6e-112 409.1 251 76.1
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.7e-112 408.7 251 73.7
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 5.2e-111 405.2 251 74.1
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 3.4e-110 402.5 251 74.9
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 9.8e-110 401.0 251 74.5
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 9.8e-110 401.0 251 73.7
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 1.7e-109 400.2 251 73.3
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 1.7e-109 400.2 247 75.3
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 2.9e-109 399.4 251 73.7
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 4.1e-108 395.6 251 70.9
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 5.4e-108 395.2 253 71.9
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.0e-108 394.8 251 72.5
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 9.2e-108 394.4 253 71.5
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.2e-107 394.0 251 72.1
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.6e-107 393.7 251 72.5
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 2.7e-107 392.9 251 70.9
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 4.6e-107 392.1 251 72.1
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 7.8e-107 391.3 246 73.6
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 1.3e-106 390.6 251 71.3
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.7e-106 390.2 247 74.1
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 3.9e-106 389.0 253 70.4
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 8.6e-106 387.9 253 70.8
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 3.3e-105 386.0 253 70.4
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 9.5e-105 384.4 251 70.9
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 3.1e-103 379.4 253 68.4
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 5.2e-103 378.6 251 69.7
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 1.2e-102 377.5 251 68.9
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 1.2e-102 377.5 251 69.3
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 1.5e-102 377.1 254 68.1
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 2.0e-102 376.7 251 70.1
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.0e-102 376.7 251 68.9
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 2.0e-102 376.7 251 68.5
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 9.8e-102 374.4 251 68.9
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 9.8e-102 374.4 253 66.4
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.7e-101 373.6 251 67.3
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.9e-101 372.9 251 68.9
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 2.9e-101 372.9 253 68.4
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 2.9e-101 372.9 253 67.6
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 3.7e-101 372.5 251 67.7
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 2.4e-100 369.8 251 69.3
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 7.0e-100 368.2 251 68.9
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 3.5e-99 365.9 248 66.9
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 6.6e-98 361.7 253 66.4
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 1.1e-97 360.9 229 73.8
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 7.3e-97 358.2 249 65.9
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 8.1e-96 354.8 257 64.6
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 8.1e-96 354.8 252 66.3
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 5.2e-95 352.1 250 64.8
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 8.9e-95 351.3 249 64.3
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.4e-94 349.4 246 66.7
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 5.8e-94 348.6 249 64.3
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 1.3e-93 347.4 239 66.9
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 1.7e-93 347.1 252 61.9
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 1.7e-93 347.1 247 64.4
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 2.2e-93 346.7 266 60.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 2.2e-93 346.7 266 60.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 2.2e-93 346.7 266 60.9
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 3.7e-93 345.9 263 62.7
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 4.9e-93 345.5 265 60.4
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 6.4e-93 345.1 252 63.5
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 4.1e-92 342.4 249 62.7
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 7.1e-92 341.7 249 62.2
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.2e-91 340.9 248 63.3
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.2e-91 340.9 249 63.1
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 1.6e-91 340.5 247 61.5
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 6.0e-91 338.6 249 62.7
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 5.6e-89 332.0 251 60.2
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 6.2e-88 328.6 203 71.4
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 5.2e-87 325.5 238 60.5
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 3.9e-82 309.3 250 58.8
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 1.6e-80 303.9 249 57.8
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 3.1e-79 299.7 248 56.9
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 8.9e-79 298.1 248 56.5
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 3.4e-78 296.2 248 56.9
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 2.3e-74 283.5 251 53.4
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 3.9e-66 256.1 154 72.1
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 1.8e-63 247.3 268 48.5
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 1.3e-61 241.1 250 47.2
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 6.0e-59 232.3 139 78.4
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 2.3e-58 230.3 281 46.6
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 3.9e-58 229.6 259 49.8
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 3.9e-50 203.0 111 78.4
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 1.1e-41 174.9 100 85.0
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.1e-31 141.7 96 68.8
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 3.0e-26 123.6 75 64.0
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 3.9e-26 123.2 100 65.0
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 6.3e-24 115.9 161 44.1
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 6.1e-19 99.4 54 74.1
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 7.5e-17 92.4 52 69.2
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 4.7e-11 73.2 45 68.9
Mapoly0033s0071 Marchantia polymorpha HOM05D006599 ORTHO05D008304 3.0e-10 70.5 182 28.6
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.8e-07 61.2 106 34.9
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.2e-06 58.5 183 29.0
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 1.6e-06 58.2 118 33.1
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 2.0e-06 57.8 117 31.6
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.7e-06 55.8 118 26.3
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.7e-06 55.8 110 28.2
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 7.7e-06 55.8 110 28.2


User provided reference genes

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