Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 3.3e-95 351.7 173 100.0
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 1.6e-70 269.6 169 76.3
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 3.6e-70 268.5 168 76.2
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 1.8e-69 266.2 171 71.3
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 6.9e-69 264.2 168 73.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 9.0e-69 263.8 168 72.0
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.2e-68 263.5 164 77.4
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.0e-68 262.7 168 72.6
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 7.6e-68 260.8 167 73.1
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 9.9e-68 260.4 158 75.3
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.7e-67 259.6 170 72.9
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 8.4e-67 257.3 161 74.5
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.1e-66 256.9 170 71.8
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.9e-66 256.1 160 73.8
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 2.4e-66 255.8 161 74.5
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 3.2e-66 255.4 156 74.4
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 5.4e-66 254.6 152 77.6
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 5.4e-66 254.6 156 75.6
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 9.3e-66 253.8 171 68.4
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 1.2e-65 253.4 169 69.2
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.6e-65 253.1 154 74.7
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 2.1e-65 252.7 166 70.5
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 2.1e-65 252.7 162 72.2
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 3.5e-65 251.9 164 70.7
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 3.5e-65 251.9 158 74.1
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 6.0e-65 251.1 169 71.0
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 6.0e-65 251.1 156 73.1
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 7.9e-65 250.8 157 73.9
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 3.0e-64 248.8 150 75.3
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 3.0e-64 248.8 164 70.7
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 3.0e-64 248.8 165 70.3
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 3.9e-64 248.4 153 73.9
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 3.9e-64 248.4 165 70.9
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 3.9e-64 248.4 169 67.5
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.1e-64 248.1 167 68.9
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 5.1e-64 248.1 170 68.2
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 6.7e-64 247.7 163 71.2
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 6.7e-64 247.7 152 74.3
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 8.7e-64 247.3 158 70.9
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.1e-63 246.9 161 71.4
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.5e-63 246.5 175 68.6
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.9e-63 246.1 153 73.2
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 2.5e-63 245.7 170 67.1
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 3.3e-63 245.4 168 69.0
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 3.3e-63 245.4 172 68.6
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 3.3e-63 245.4 165 68.5
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 5.6e-63 244.6 167 68.9
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 5.6e-63 244.6 167 68.9
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 5.6e-63 244.6 166 71.1
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 5.6e-63 244.6 152 72.4
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 9.6e-63 243.8 164 68.9
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 9.6e-63 243.8 164 68.9
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.3e-62 243.4 167 67.1
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 1.6e-62 243.0 162 69.1
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 1.6e-62 243.0 167 68.3
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 1.6e-62 243.0 164 69.5
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 2.1e-62 242.7 168 67.3
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 2.1e-62 242.7 165 69.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 2.8e-62 242.3 164 68.3
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 4.8e-62 241.5 166 69.9
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 4.8e-62 241.5 166 69.9
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 6.2e-62 241.1 168 67.3
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 8.1e-62 240.7 151 74.2
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.4e-61 240.0 149 75.8
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 1.4e-61 240.0 206 60.7
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 3.1e-61 238.8 166 69.3
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 9.0e-61 237.3 156 68.6
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.0e-61 237.3 166 68.1
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.2e-60 236.9 151 70.9
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.2e-60 236.9 163 69.3
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 1.2e-60 236.9 151 72.8
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.0e-60 236.1 166 69.3
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.0e-60 236.1 156 67.3
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 5.8e-60 234.6 150 70.7
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 1.0e-59 233.8 165 67.9
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.0e-59 233.8 163 65.0
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.2e-59 232.6 154 71.4
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 2.2e-59 232.6 154 69.5
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 2.2e-59 232.6 180 65.0
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 3.8e-59 231.9 151 69.5
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 4.2e-58 228.4 162 64.8
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 4.2e-58 228.4 159 67.3
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 9.3e-58 227.3 169 64.5
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.2e-57 226.9 173 65.3
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 6.0e-57 224.6 140 73.6
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 3.0e-56 222.2 148 66.9
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.2e-52 210.3 158 66.5
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 2.6e-52 209.1 123 77.2
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 1.3e-51 206.8 159 59.1
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 1.1e-50 203.8 193 56.0
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 3.5e-49 198.7 123 73.2
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.0e-48 197.2 154 66.2
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.1e-47 193.7 149 60.4
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 9.7e-47 190.7 118 70.3
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 4.8e-46 188.3 152 63.2
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.4e-44 182.2 132 63.6
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 1.0e-43 180.6 125 64.8
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 8.5e-43 177.6 174 55.2
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 1.4e-42 176.8 155 54.8
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.3e-35 153.7 162 49.4
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.1e-34 150.6 156 50.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 4.7e-33 145.2 98 65.3
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-32 141.0 92 69.6
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 7.0e-29 131.3 77 77.9
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.0e-28 129.8 89 70.8
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 4.2e-26 122.1 114 51.8
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.8e-21 106.7 71 71.8
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.4e-13 80.5 60 63.3
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 6.5e-11 71.6 43 76.7
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.1e-09 65.1 44 70.5
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 4.0e-08 62.4 36 77.8
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 7.5e-07 58.2 78 46.2
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 7.5e-07 58.2 41 68.3
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 4.9e-06 55.5 66 45.5
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 8.3e-06 54.7 34 67.6


User provided reference genes

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